Cow genome map
Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
Conread position: | 1-282 |
Cow position: | chr28:7810665-7810946 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 56 |
Conread position: | 1-346 |
Cow position: | chr28:7758566-7758911 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 221 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 40, 54 |
Conread position: | 1-475 |
Cow position: | chr28:9290242-9290714 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 54 |
Conread position: | 1-526 |
Cow position: | chr28:7810422-7810938 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 1-604 |
Cow position: | chr28:9253009-9253612 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 59 |
Conread position: | 1-610 |
Cow position: | chr28:11333811-11333202 (view UCSC Genome Browser custom track) |
Alignm length: | 619 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 214 |
Conread position: | 1-690 |
Cow position: | chr28:9299057-9299727 (view UCSC Genome Browser custom track) |
Alignm length: | 693 |
Alignm identity: | 455 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 555, 102 |
Conread position: | 1-697 |
Cow position: | chr28:9298891-9299571 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 450 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 0 |
Conread position: | 1-762 |
Cow position: | chr28:7758078-7758822 (view UCSC Genome Browser custom track) |
Alignm length: | 764 |
Alignm identity: | 484 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 196 |
Conread position: | 1-768 |
Cow position: | chr28:7757406-7758173 (view UCSC Genome Browser custom track) |
Alignm length: | 768 |
Alignm identity: | 543 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-768 |
Cow position: | chr28:7757490-7758257 (view UCSC Genome Browser custom track) |
Alignm length: | 769 |
Alignm identity: | 534 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 59 |
Conread position: | 1-768 |
Cow position: | chr28:7757826-7758577 (view UCSC Genome Browser custom track) |
Alignm length: | 768 |
Alignm identity: | 515 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 481, 0 |
Conread position: | 1-768 |
Cow position: | chr28:9289830-9290587 (view UCSC Genome Browser custom track) |
Alignm length: | 773 |
Alignm identity: | 509 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 51 |
Conread position: | 1-768 |
Cow position: | chr28:34695734-34696501 (view UCSC Genome Browser custom track) |
Alignm length: | 772 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 73 |
Conread position: | 2-236 |
Cow position: | chr28:33210387-33210622 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 158 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 174, 0 |
Conread position: | 2-355 |
Cow position: | chr28:9253262-9253615 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-367 |
Cow position: | chr28:7810582-7810947 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-419 |
Cow position: | chr28:34673514-34673931 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 252 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 163, 159 |
Conread position: | 2-425 |
Cow position: | chr28:34679485-34679070 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 276 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 142, 97 |
Conread position: | 2-476 |
Cow position: | chr28:34673430-34673904 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 291 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 139, 147 |
Conread position: | 2-616 |
Cow position: | chr28:7810339-7810944 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 445 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 58 |
Conread position: | 2-655 |
Cow position: | chr28:34695903-34696556 (view UCSC Genome Browser custom track) |
Alignm length: | 659 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 70 |
Conread position: | 2-677 |
Cow position: | chr28:7757659-7758334 (view UCSC Genome Browser custom track) |
Alignm length: | 677 |
Alignm identity: | 482 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 58 |
Conread position: | 2-710 |
Cow position: | chr28:11334062-11333360 (view UCSC Genome Browser custom track) |
Alignm length: | 717 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 60 |
Conread position: | 2-715 |
Cow position: | chr28:11333894-11333181 (view UCSC Genome Browser custom track) |
Alignm length: | 721 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 394, 374 |
Conread position: | 2-727 |
Cow position: | chr28:9289992-9290714 (view UCSC Genome Browser custom track) |
Alignm length: | 730 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 212 |
Conread position: | 2-759 |
Cow position: | chr28:7757575-7758332 (view UCSC Genome Browser custom track) |
Alignm length: | 759 |
Alignm identity: | 533 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 636, 643 |
Conread position: | 2-766 |
Cow position: | chr28:7758163-7758911 (view UCSC Genome Browser custom track) |
Alignm length: | 768 |
Alignm identity: | 476 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 58 |
Conread position: | 2-768 |
Cow position: | chr28:9298807-9299558 (view UCSC Genome Browser custom track) |
Alignm length: | 769 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 187 |
Conread position: | 2-768 |
Cow position: | chr28:11334146-11333386 (view UCSC Genome Browser custom track) |
Alignm length: | 770 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 310, 305 |
Conread position: | 3-763 |
Cow position: | chr28:9289910-9290666 (view UCSC Genome Browser custom track) |
Alignm length: | 770 |
Alignm identity: | 519 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 25 |
Conread position: | 8-439 |
Cow position: | chr28:33210225-33210657 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 261 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 336, 0 |
Conread position: | 10-688 |
Cow position: | chr28:9252934-9253612 (view UCSC Genome Browser custom track) |
Alignm length: | 679 |
Alignm identity: | 486 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 10-768 |
Cow position: | chr28:9252768-9253524 (view UCSC Genome Browser custom track) |
Alignm length: | 763 |
Alignm identity: | 528 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 123 |
Conread position: | 11-768 |
Cow position: | chr28:9298567-9299306 (view UCSC Genome Browser custom track) |
Alignm length: | 762 |
Alignm identity: | 512 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 51 |
Conread position: | 14-768 |
Cow position: | chr28:7757335-7758089 (view UCSC Genome Browser custom track) |
Alignm length: | 756 |
Alignm identity: | 525 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 624, 630 |
Conread position: | 14-768 |
Cow position: | chr28:7758007-7758745 (view UCSC Genome Browser custom track) |
Alignm length: | 756 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 214 |
Conread position: | 18-560 |
Cow position: | chr28:34673362-34673904 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 330 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 34, 56 |
Conread position: | 24-487 |
Cow position: | chr28:34679547-34679092 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 295 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 180, 162 |
Conread position: | 24-751 |
Cow position: | chr28:34695841-34696568 (view UCSC Genome Browser custom track) |
Alignm length: | 730 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 129 |
Conread position: | 30-701 |
Cow position: | chr28:7810283-7810945 (view UCSC Genome Browser custom track) |
Alignm length: | 674 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 30 |
Conread position: | 55-763 |
Cow position: | chr28:9252894-9253603 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 510 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 257 |
Conread position: | 56-450 |
Cow position: | chr28:7810552-7810946 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 74-768 |
Cow position: | chr28:7757233-7757921 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 475 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 0 |
Conread position: | 74-768 |
Cow position: | chr28:7810252-7810928 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 490 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 312, 32 |
Conread position: | 74-768 |
Cow position: | chr28:9252748-9253440 (view UCSC Genome Browser custom track) |
Alignm length: | 697 |
Alignm identity: | 467 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 175, 138 |
Conread position: | 75-768 |
Cow position: | chr28:9252584-9253272 (view UCSC Genome Browser custom track) |
Alignm length: | 698 |
Alignm identity: | 447 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 64 |
Conread position: | 75-768 |
Cow position: | chr28:9289664-9290337 (view UCSC Genome Browser custom track) |
Alignm length: | 700 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 403, 58 |
Conread position: | 93-630 |
Cow position: | chr28:34673353-34673890 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 337 |
Alignm E-value: | 6e-40 |
Alignm gaps (pig, cow): | 116, 139 |
Conread position: | 95-476 |
Cow position: | chr28:33210228-33210610 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 242 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 198, 208 |
Conread position: | 97-765 |
Cow position: | chr28:7757334-7758002 (view UCSC Genome Browser custom track) |
Alignm length: | 669 |
Alignm identity: | 464 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 162-768 |
Cow position: | chr28:11334154-11333548 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 141 |
Conread position: | 188-755 |
Cow position: | chr28:34673364-34673931 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 138 |
Conread position: | 224-761 |
Cow position: | chr28:34679597-34679070 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 268, 51 |
Conread position: | 236-768 |
Cow position: | chr28:9298208-9298735 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 320 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 75, 37 |
Conread position: | 238-768 |
Cow position: | chr28:34695719-34696249 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 322 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 61, 77 |
Conread position: | 242-768 |
Cow position: | chr28:11334242-11333716 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 319 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 52, 62 |
Conread position: | 261-768 |
Cow position: | chr28:34673353-34673860 (view UCSC Genome Browser custom track) |
Alignm length: | 512 |
Alignm identity: | 317 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 129, 142 |
Conread position: | 263-690 |
Cow position: | chr28:33210228-33210656 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 268 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 333, 403 |
Conread position: | 347-740 |
Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 248 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 151, 160 |
Conread position: | 388-768 |
Cow position: | chr28:34679601-34679220 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 241 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 97, 58 |
Conread position: | 401-768 |
Cow position: | chr28:11334167-11333800 (view UCSC Genome Browser custom track) |
Alignm length: | 369 |
Alignm identity: | 239 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 331, 324 |
Conread position: | 409-748 |
Cow position: | chr28:7809810-7810143 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 211 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 70, 80 |
Conread position: | 431-765 |
Cow position: | chr28:33210228-33210562 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 211 |
Alignm E-value: | 3e-32 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 512-768 |
Cow position: | chr28:33210225-33210481 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 166 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.