Cow genome map

Conread name: Ss1.1-Emb1-C0005194_C01.5

Conread position: 1-282
Cow position: chr28:7810665-7810946 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 56

Conread position: 1-346
Cow position: chr28:7758566-7758911 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 221
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 54

Conread position: 1-475
Cow position: chr28:9290242-9290714 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 54

Conread position: 1-526
Cow position: chr28:7810422-7810938 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 1-604
Cow position: chr28:9253009-9253612 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 1-610
Cow position: chr28:11333811-11333202 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 214

Conread position: 1-690
Cow position: chr28:9299057-9299727 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 555, 102

Conread position: 1-697
Cow position: chr28:9298891-9299571 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 1-762
Cow position: chr28:7758078-7758822 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 196

Conread position: 1-768
Cow position: chr28:7757406-7758173 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-768
Cow position: chr28:7757490-7758257 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 59

Conread position: 1-768
Cow position: chr28:7757826-7758577 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 481, 0

Conread position: 1-768
Cow position: chr28:9289830-9290587 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 51

Conread position: 1-768
Cow position: chr28:34695734-34696501 (view UCSC Genome Browser custom track)
Alignm length: 772
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 73

Conread position: 2-236
Cow position: chr28:33210387-33210622 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 174, 0

Conread position: 2-355
Cow position: chr28:9253262-9253615 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-367
Cow position: chr28:7810582-7810947 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-419
Cow position: chr28:34673514-34673931 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 252
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 163, 159

Conread position: 2-425
Cow position: chr28:34679485-34679070 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 276
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 142, 97

Conread position: 2-476
Cow position: chr28:34673430-34673904 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 291
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 139, 147

Conread position: 2-616
Cow position: chr28:7810339-7810944 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 58

Conread position: 2-655
Cow position: chr28:34695903-34696556 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 70

Conread position: 2-677
Cow position: chr28:7757659-7758334 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 58

Conread position: 2-710
Cow position: chr28:11334062-11333360 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 60

Conread position: 2-715
Cow position: chr28:11333894-11333181 (view UCSC Genome Browser custom track)
Alignm length: 721
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 374

Conread position: 2-727
Cow position: chr28:9289992-9290714 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 212

Conread position: 2-759
Cow position: chr28:7757575-7758332 (view UCSC Genome Browser custom track)
Alignm length: 759
Alignm identity: 533
Alignm E-value: 0
Alignm gaps (pig, cow): 636, 643

Conread position: 2-766
Cow position: chr28:7758163-7758911 (view UCSC Genome Browser custom track)
Alignm length: 768
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 58

Conread position: 2-768
Cow position: chr28:9298807-9299558 (view UCSC Genome Browser custom track)
Alignm length: 769
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 187

Conread position: 2-768
Cow position: chr28:11334146-11333386 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 305

Conread position: 3-763
Cow position: chr28:9289910-9290666 (view UCSC Genome Browser custom track)
Alignm length: 770
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 25

Conread position: 8-439
Cow position: chr28:33210225-33210657 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 261
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 336, 0

Conread position: 10-688
Cow position: chr28:9252934-9253612 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-768
Cow position: chr28:9252768-9253524 (view UCSC Genome Browser custom track)
Alignm length: 763
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 123

Conread position: 11-768
Cow position: chr28:9298567-9299306 (view UCSC Genome Browser custom track)
Alignm length: 762
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 51

Conread position: 14-768
Cow position: chr28:7757335-7758089 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 624, 630

Conread position: 14-768
Cow position: chr28:7758007-7758745 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 214

Conread position: 18-560
Cow position: chr28:34673362-34673904 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 330
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 56

Conread position: 24-487
Cow position: chr28:34679547-34679092 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 295
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 180, 162

Conread position: 24-751
Cow position: chr28:34695841-34696568 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 129

Conread position: 30-701
Cow position: chr28:7810283-7810945 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 30

Conread position: 55-763
Cow position: chr28:9252894-9253603 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 257

Conread position: 56-450
Cow position: chr28:7810552-7810946 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 74-768
Cow position: chr28:7757233-7757921 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 74-768
Cow position: chr28:7810252-7810928 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 32

Conread position: 74-768
Cow position: chr28:9252748-9253440 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 138

Conread position: 75-768
Cow position: chr28:9252584-9253272 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 64

Conread position: 75-768
Cow position: chr28:9289664-9290337 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 58

Conread position: 93-630
Cow position: chr28:34673353-34673890 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 337
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 116, 139

Conread position: 95-476
Cow position: chr28:33210228-33210610 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 242
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 198, 208

Conread position: 97-765
Cow position: chr28:7757334-7758002 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 162-768
Cow position: chr28:11334154-11333548 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 141

Conread position: 188-755
Cow position: chr28:34673364-34673931 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 138

Conread position: 224-761
Cow position: chr28:34679597-34679070 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 51

Conread position: 236-768
Cow position: chr28:9298208-9298735 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 320
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 75, 37

Conread position: 238-768
Cow position: chr28:34695719-34696249 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 322
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 61, 77

Conread position: 242-768
Cow position: chr28:11334242-11333716 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 319
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 52, 62

Conread position: 261-768
Cow position: chr28:34673353-34673860 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 317
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 129, 142

Conread position: 263-690
Cow position: chr28:33210228-33210656 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 268
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 333, 403

Conread position: 347-740
Cow position: chr28:33210228-33210622 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 248
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 151, 160

Conread position: 388-768
Cow position: chr28:34679601-34679220 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 241
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 97, 58

Conread position: 401-768
Cow position: chr28:11334167-11333800 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 331, 324

Conread position: 409-748
Cow position: chr28:7809810-7810143 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 211
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 70, 80

Conread position: 431-765
Cow position: chr28:33210228-33210562 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 211
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 512-768
Cow position: chr28:33210225-33210481 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 166
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.