Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-409 |
| Cow position: | chr7:1438323-1438731 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 1-468 |
| Cow position: | chr7:8243628-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 240, 220 |
| Conread position: | 1-476 |
| Cow position: | chr7:18390320-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-553 |
| Cow position: | chr7:8278174-8278717 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 332 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 74, 54 |
| Conread position: | 1-565 |
| Cow position: | chr7:1439715-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 1-681 |
| Cow position: | chr7:11601113-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 224 |
| Conread position: | 1-720 |
| Cow position: | chr7:8242873-8243591 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 72 |
| Conread position: | 1-722 |
| Cow position: | chr7:8325395-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 1-733 |
| Cow position: | chr7:1014761-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 140 |
| Conread position: | 1-761 |
| Cow position: | chr7:42879034-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 1-767 |
| Cow position: | chr7:8243209-8243974 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 1-768 |
| Cow position: | chr7:1014431-1015192 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 204 |
| Conread position: | 1-768 |
| Cow position: | chr7:1439460-1440227 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 1-768 |
| Cow position: | chr7:3179855-3180622 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 308 |
| Conread position: | 1-768 |
| Cow position: | chr7:3180023-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 133 |
| Conread position: | 1-768 |
| Cow position: | chr7:3180107-3180873 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 376 |
| Conread position: | 1-768 |
| Cow position: | chr7:8242957-8243723 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 231 |
| Conread position: | 1-768 |
| Cow position: | chr7:8277838-8278603 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 62 |
| Conread position: | 1-768 |
| Cow position: | chr7:8325059-8325826 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 158 |
| Conread position: | 1-768 |
| Cow position: | chr7:8325311-8326078 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 1-768 |
| Cow position: | chr7:42879118-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 547 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 381 |
| Conread position: | 1-768 |
| Cow position: | chr7:42879202-42878435 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr7:42879370-42878603 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 23 |
| Conread position: | 2-442 |
| Cow position: | chr7:11434657-11434224 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 278 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 2-482 |
| Cow position: | chr7:1438240-1438720 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 2-585 |
| Cow position: | chr7:18390237-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-768 |
| Cow position: | chr7:1014516-1015276 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 131 |
| Conread position: | 2-768 |
| Cow position: | chr7:3179772-3180538 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 391 |
| Conread position: | 2-768 |
| Cow position: | chr7:3179940-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 495 |
| Conread position: | 2-768 |
| Cow position: | chr7:8277501-8278269 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 3-733 |
| Cow position: | chr7:1439546-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 56 |
| Conread position: | 3-768 |
| Cow position: | chr7:42879284-42878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-636 |
| Cow position: | chr7:18390156-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-759 |
| Cow position: | chr7:18389989-18390742 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 214 |
| Conread position: | 7-768 |
| Cow position: | chr7:1014183-1014940 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 215 |
| Conread position: | 8-726 |
| Cow position: | chr7:11434973-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 445 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 11-724 |
| Cow position: | chr7:8324817-8325530 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 14-765 |
| Cow position: | chr7:11601184-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 16-656 |
| Cow position: | chr7:1438088-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 108 |
| Conread position: | 16-724 |
| Cow position: | chr7:8242804-8243511 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 26-768 |
| Cow position: | chr7:1014702-1015444 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-768 |
| Cow position: | chr7:11601217-11600514 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 6 |
| Conread position: | 65-768 |
| Cow position: | chr7:3179751-3180454 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 405 |
| Conread position: | 72-768 |
| Cow position: | chr7:18389971-18390667 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 165 |
| Conread position: | 74-768 |
| Cow position: | chr7:8277323-8278017 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 418 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 303, 317 |
| Conread position: | 76-768 |
| Cow position: | chr7:1439451-1440143 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 136 |
| Conread position: | 79-768 |
| Cow position: | chr7:1437986-1438670 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 56 |
| Conread position: | 80-728 |
| Cow position: | chr7:18390147-18390795 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 92-724 |
| Cow position: | chr7:8243383-8244013 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 381 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 97-740 |
| Cow position: | chr7:1438085-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 110 |
| Conread position: | 100-768 |
| Cow position: | chr7:8242804-8243471 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 395 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 110-726 |
| Cow position: | chr7:28846438-28847054 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 347 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 125 |
| Conread position: | 110-768 |
| Cow position: | chr7:3179712-3180370 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 460 |
| Conread position: | 248-768 |
| Cow position: | chr7:42879458-42878939 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 260-720 |
| Cow position: | chr7:8324730-8325190 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 325-764 |
| Cow position: | chr7:1439448-1439888 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 140 |
| Conread position: | 344-768 |
| Cow position: | chr7:8277257-8277681 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 344-768 |
| Cow position: | chr7:8324730-8325154 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 355-768 |
| Cow position: | chr7:3179705-3180118 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 285 |
| Conread position: | 425-768 |
| Cow position: | chr7:3179691-3180034 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-720 |
| Cow position: | chr7:8277257-8277549 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 575-757 |
| Cow position: | chr7:1439446-1439627 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 0 |
Show alignments to all cow chromosomes.