Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_C01.5 |
| Conread position: | 1-601 |
| Cow position: | chr8:46816791-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 471 |
| Conread position: | 1-626 |
| Cow position: | chr8:48406884-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 131 |
| Conread position: | 1-706 |
| Cow position: | chr8:48407472-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 392 |
| Conread position: | 1-710 |
| Cow position: | chr8:55581064-55581773 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 410 |
| Conread position: | 1-722 |
| Cow position: | chr8:55580980-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-747 |
| Cow position: | chr8:45201260-45202006 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 376 |
| Conread position: | 1-762 |
| Cow position: | chr8:46816539-46817300 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 577, 565 |
| Conread position: | 1-762 |
| Cow position: | chr8:46816623-46817384 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-765 |
| Cow position: | chr8:45201176-45201940 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-765 |
| Cow position: | chr8:55580726-55581492 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 1-766 |
| Cow position: | chr8:55580896-55581661 (view UCSC Genome Browser custom track) |
| Alignm length: | 767 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 497 |
| Conread position: | 1-768 |
| Cow position: | chr8:45200840-45201607 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 527 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 381 |
| Conread position: | 1-768 |
| Cow position: | chr8:45201008-45201775 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 219 |
| Conread position: | 1-768 |
| Cow position: | chr8:45201092-45201859 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816035-46816802 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 299 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816119-46816886 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 381 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816203-46816970 (view UCSC Genome Browser custom track) |
| Alignm length: | 768 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816287-46817054 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 667, 671 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816371-46817138 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 153 |
| Conread position: | 1-768 |
| Cow position: | chr8:46816455-46817222 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 70 |
| Conread position: | 1-768 |
| Cow position: | chr8:48407136-48406369 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 305 |
| Conread position: | 1-768 |
| Cow position: | chr8:48407304-48406537 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 223 |
| Conread position: | 2-710 |
| Cow position: | chr8:48406967-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 228 |
| Conread position: | 2-764 |
| Cow position: | chr8:48407051-48406289 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 221 |
| Conread position: | 2-768 |
| Cow position: | chr8:48407555-48406789 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 468 |
| Conread position: | 6-768 |
| Cow position: | chr8:48407635-48406873 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 377 |
| Conread position: | 7-768 |
| Cow position: | chr8:46815957-46816718 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 37 |
| Conread position: | 14-768 |
| Cow position: | chr8:45200937-45201691 (view UCSC Genome Browser custom track) |
| Alignm length: | 757 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 183 |
| Conread position: | 33-464 |
| Cow position: | chr8:6958058-6957628 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 192, 187 |
| Conread position: | 33-768 |
| Cow position: | chr8:45200788-45201523 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 347 |
| Conread position: | 33-768 |
| Cow position: | chr8:55580844-55581579 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-768 |
| Cow position: | chr8:48407658-48406957 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 577 |
| Conread position: | 115-768 |
| Cow position: | chr8:45200786-45201439 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 89 |
| Conread position: | 116-462 |
| Cow position: | chr8:6958059-6957714 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 273, 283 |
| Conread position: | 198-468 |
| Cow position: | chr8:6958061-6957791 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 246-768 |
| Cow position: | chr8:55580805-55581327 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-760 |
| Cow position: | chr8:6958059-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 270, 284 |
| Conread position: | 367-766 |
| Cow position: | chr8:6958060-6957661 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 206, 212 |
| Conread position: | 375-767 |
| Cow position: | chr8:46815575-46815958 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 27, 13 |
Show alignments to all cow chromosomes.