Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-256 |
| Cow position: | chr14:3080051-3079796 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-294 |
| Cow position: | chr14:3156192-3156482 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-247 |
| Cow position: | chr14:681022-681264 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 107, 101 |
| Conread position: | 5-256 |
| Cow position: | chr14:3127643-3127392 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-294 |
| Cow position: | chr14:3127979-3127690 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-255 |
| Cow position: | chr14:25894996-25895239 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 100 |
| Conread position: | 13-257 |
| Cow position: | chr14:25794963-25794719 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-271 |
| Cow position: | chr14:3155544-3155802 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-288 |
| Cow position: | chr14:25783731-25784006 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 13-288 |
| Cow position: | chr14:25784151-25784426 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 78 |
| Conread position: | 13-294 |
| Cow position: | chr14:25859236-25859516 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 13-301 |
| Cow position: | chr14:3127803-3127515 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-284 |
| Cow position: | chr14:25876960-25877229 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 14 |
| Conread position: | 17-271 |
| Cow position: | chr14:3156121-3156375 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-288 |
| Cow position: | chr14:25784071-25784342 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr14:3080119-3079842 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-295 |
| Cow position: | chr14:3155953-3156231 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-305 |
| Cow position: | chr14:680950-681240 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 18-256 |
| Cow position: | chr14:3155465-3155703 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-285 |
| Cow position: | chr14:3156038-3156305 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-288 |
| Cow position: | chr14:25783820-25784090 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 18-292 |
| Cow position: | chr14:25783484-25783758 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-292 |
| Cow position: | chr14:25783904-25784178 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-292 |
| Cow position: | chr14:25784240-25784514 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-293 |
| Cow position: | chr14:680783-681058 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 229, 248 |
| Conread position: | 18-294 |
| Cow position: | chr14:25794874-25794598 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 232, 243 |
| Conread position: | 18-301 |
| Cow position: | chr14:25836103-25836386 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 247, 240 |
| Conread position: | 19-257 |
| Cow position: | chr14:3101195-3100960 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 23-271 |
| Cow position: | chr14:25795037-25794789 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-266 |
| Cow position: | chr14:25836278-25836519 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-294 |
| Cow position: | chr14:25877138-25877407 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-303 |
| Cow position: | chr14:25859751-25860029 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 160, 170 |
| Conread position: | 25-303 |
| Cow position: | chr14:25860171-25860449 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-303 |
| Cow position: | chr14:25877222-25877500 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-257 |
| Cow position: | chr14:25860340-25860571 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 26-281 |
| Cow position: | chr14:25836447-25836702 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 26-285 |
| Cow position: | chr14:25836615-25836874 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 26-294 |
| Cow position: | chr14:25876635-25876903 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 26-301 |
| Cow position: | chr14:25876887-25877162 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 156, 166 |
| Conread position: | 26-301 |
| Cow position: | chr14:25910979-25911254 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 83 |
| Conread position: | 26-303 |
| Cow position: | chr14:25836363-25836640 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-303 |
| Cow position: | chr14:25836867-25837144 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 27-265 |
| Cow position: | chr14:25876804-25877042 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 162, 170 |
| Conread position: | 27-284 |
| Cow position: | chr14:447738-447995 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 79 |
| Conread position: | 27-284 |
| Cow position: | chr14:25794697-25794440 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-285 |
| Cow position: | chr14:3127705-3127447 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-285 |
| Cow position: | chr14:25836196-25836454 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-288 |
| Cow position: | chr14:25783577-25783838 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 27-288 |
| Cow position: | chr14:25877560-25877821 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 157, 168 |
| Conread position: | 27-292 |
| Cow position: | chr14:25783325-25783590 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr14:25783409-25783674 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 27-292 |
| Cow position: | chr14:25783997-25784262 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 27-292 |
| Cow position: | chr14:25784333-25784598 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 27-292 |
| Cow position: | chr14:25794781-25794516 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 27-292 |
| Cow position: | chr14:25795285-25795020 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 220, 240 |
| Conread position: | 27-292 |
| Cow position: | chr14:25860509-25860774 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 157, 167 |
| Conread position: | 27-294 |
| Cow position: | chr14:25859333-25859600 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 118, 109 |
| Conread position: | 27-294 |
| Cow position: | chr14:25859585-25859852 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 236, 228 |
| Conread position: | 27-295 |
| Cow position: | chr14:3080277-3080009 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-292 |
| Cow position: | chr14:25795368-25795104 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 33-285 |
| Cow position: | chr14:25877314-25877566 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 33-294 |
| Cow position: | chr14:25836538-25836799 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-268 |
| Cow position: | chr14:25836707-25836941 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 34-284 |
| Cow position: | chr14:25836959-25837209 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-292 |
| Cow position: | chr14:25794521-25794263 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 39-301 |
| Cow position: | chr14:25859681-25859943 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 50 |
| Conread position: | 39-303 |
| Cow position: | chr14:25876564-25876828 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 45-285 |
| Cow position: | chr14:3155408-3155648 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-292 |
| Cow position: | chr14:3155900-3156144 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 217, 207 |
Show alignments to all cow chromosomes.