Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-292 |
| Cow position: | chr17:22452174-22451883 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 1-292 |
| Cow position: | chr17:22473457-22473748 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 86 |
| Conread position: | 1-294 |
| Cow position: | chr17:22551973-22551680 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr17:22552897-22552604 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-316 |
| Cow position: | chr17:22552813-22552496 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 3-303 |
| Cow position: | chr17:22552139-22551839 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 4-321 |
| Cow position: | chr17:22499269-22498950 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 283, 0 |
| Conread position: | 7-301 |
| Cow position: | chr17:22552219-22551925 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-301 |
| Cow position: | chr17:22552723-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-316 |
| Cow position: | chr17:22552051-22551740 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 8-219 |
| Cow position: | chr17:22589384-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 140, 131 |
| Conread position: | 9-232 |
| Cow position: | chr17:22551713-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-292 |
| Cow position: | chr17:22590139-22589856 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-301 |
| Cow position: | chr17:22589719-22589427 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-301 |
| Cow position: | chr17:22589803-22589511 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-303 |
| Cow position: | chr17:22589467-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 13-292 |
| Cow position: | chr17:22499092-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 13-318 |
| Cow position: | chr17:22473385-22473692 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 13-344 |
| Cow position: | chr17:22553053-22552720 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 270, 327 |
| Conread position: | 17-285 |
| Cow position: | chr17:22499172-22498904 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr17:22452326-22452049 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-292 |
| Cow position: | chr17:22498919-22498645 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 125, 117 |
| Conread position: | 18-292 |
| Cow position: | chr17:22589962-22589688 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-303 |
| Cow position: | chr17:22499003-22498718 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-304 |
| Cow position: | chr17:22590046-22589758 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 18-316 |
| Cow position: | chr17:22590214-22589914 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 18-321 |
| Cow position: | chr17:22589626-22589321 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 251, 260 |
| Conread position: | 23-292 |
| Cow position: | chr17:22451985-22451715 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 25-285 |
| Cow position: | chr17:22452066-22451806 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 87, 67 |
| Conread position: | 26-303 |
| Cow position: | chr17:22552452-22552175 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr17:22452232-22451967 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 253, 246 |
| Conread position: | 27-292 |
| Cow position: | chr17:22452400-22452135 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 154, 135 |
| Conread position: | 27-294 |
| Cow position: | chr17:22590289-22590022 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr17:22498826-22498552 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr17:22551863-22551589 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr17:22552283-22552007 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr17:22552535-22552259 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-316 |
| Cow position: | chr17:22499330-22499039 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 27-316 |
| Cow position: | chr17:22552955-22552664 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 27-321 |
| Cow position: | chr17:22552619-22552323 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 253, 247 |
| Conread position: | 27-344 |
| Cow position: | chr17:22552367-22552048 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 27-376 |
| Cow position: | chr17:22551779-22551431 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 266, 304 |
| Conread position: | 33-294 |
| Cow position: | chr17:22473573-22473834 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 58 |
| Conread position: | 34-294 |
| Cow position: | chr17:22473322-22473582 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-321 |
| Cow position: | chr17:22589526-22589237 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 151, 163 |
| Conread position: | 35-294 |
| Cow position: | chr17:22473659-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-292 |
| Cow position: | chr17:22499394-22499149 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 111-303 |
| Cow position: | chr17:22590289-22590097 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.