Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-292 |
| Cow position: | chr19:23650014-23650305 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr19:23649678-23649971 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-313 |
| Cow position: | chr19:14940280-14940594 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 5-294 |
| Cow position: | chr19:14940032-14940321 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-286 |
| Cow position: | chr19:14960430-14960150 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 6-294 |
| Cow position: | chr19:14960262-14959976 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 8-288 |
| Cow position: | chr19:23614319-23614599 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-288 |
| Cow position: | chr19:23614488-23614767 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-303 |
| Cow position: | chr19:23613816-23614110 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-301 |
| Cow position: | chr19:23613903-23614192 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-257 |
| Cow position: | chr19:43570172-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 169, 161 |
| Conread position: | 13-274 |
| Cow position: | chr19:14948331-14948070 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-292 |
| Cow position: | chr19:23597249-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-292 |
| Cow position: | chr19:23649438-23649717 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-292 |
| Cow position: | chr19:43570088-43569809 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 13-303 |
| Cow position: | chr19:23614240-23614530 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-304 |
| Cow position: | chr19:20677667-20677960 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 13-313 |
| Cow position: | chr19:20678255-20678557 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 15-247 |
| Cow position: | chr19:23649944-23650176 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-294 |
| Cow position: | chr19:23649357-23649635 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 17-260 |
| Cow position: | chr19:20678343-20678586 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-283 |
| Cow position: | chr19:14940800-14941066 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-284 |
| Cow position: | chr19:23650198-23650465 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 133, 140 |
| Conread position: | 17-292 |
| Cow position: | chr19:23613656-23613931 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-293 |
| Cow position: | chr19:23649610-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr19:23614160-23614437 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr19:23650114-23650391 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-295 |
| Cow position: | chr19:23649862-23650140 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-303 |
| Cow position: | chr19:23614832-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 81 |
| Conread position: | 17-303 |
| Cow position: | chr19:23649526-23649812 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-313 |
| Cow position: | chr19:20677751-20678053 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 18-215 |
| Cow position: | chr19:14959023-14958826 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-241 |
| Cow position: | chr19:14959596-14959373 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-247 |
| Cow position: | chr19:14940381-14940610 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-256 |
| Cow position: | chr19:23613405-23613643 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-257 |
| Cow position: | chr19:14960000-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 137, 124 |
| Conread position: | 18-259 |
| Cow position: | chr19:20677924-20678165 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-292 |
| Cow position: | chr19:14940549-14940823 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-292 |
| Cow position: | chr19:23613993-23614267 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-295 |
| Cow position: | chr19:23613489-23613766 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-303 |
| Cow position: | chr19:14940213-14940498 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-303 |
| Cow position: | chr19:23614581-23614866 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 71 |
| Conread position: | 24-292 |
| Cow position: | chr19:14960078-14959810 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 148, 136 |
| Conread position: | 26-292 |
| Cow position: | chr19:14948485-14948220 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 26-292 |
| Cow position: | chr19:23614673-23614939 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-257 |
| Cow position: | chr19:14948401-14948171 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr19:23597347-23597612 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr19:23614086-23614351 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr19:23614422-23614687 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr19:43570242-43569977 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 239, 234 |
| Conread position: | 27-294 |
| Cow position: | chr19:14940474-14940741 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-294 |
| Cow position: | chr19:14959098-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-294 |
| Cow position: | chr19:23597014-23597278 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 27-294 |
| Cow position: | chr19:23597431-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-300 |
| Cow position: | chr19:43569906-43569637 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 238, 175 |
| Conread position: | 27-313 |
| Cow position: | chr19:20677849-20678137 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 269, 0 |
| Conread position: | 27-316 |
| Cow position: | chr19:14959669-14959380 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 76, 17 |
| Conread position: | 27-321 |
| Cow position: | chr19:23613582-23613878 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 266, 0 |
| Conread position: | 32-271 |
| Cow position: | chr19:20635562-20635323 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-294 |
| Cow position: | chr19:43570395-43570143 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 33-292 |
| Cow position: | chr19:14960153-14959894 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-292 |
| Cow position: | chr19:20635393-20635134 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-294 |
| Cow position: | chr19:14940648-14940909 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-294 |
| Cow position: | chr19:14940732-14940993 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-294 |
| Cow position: | chr19:20678191-20678452 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-303 |
| Cow position: | chr19:14940144-14940414 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-307 |
| Cow position: | chr19:20678443-20678717 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-288 |
| Cow position: | chr19:23597188-23597437 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 38-313 |
| Cow position: | chr19:20635304-20635027 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 44-294 |
| Cow position: | chr19:14939987-14940237 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-304 |
| Cow position: | chr19:23613351-23613609 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 66-247 |
| Cow position: | chr19:14959305-14959124 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-304 |
| Cow position: | chr19:14960448-14960214 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 111-294 |
| Cow position: | chr19:43570242-43570059 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.