Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-226 |
| Cow position: | chr25:36844583-36844358 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-235 |
| Cow position: | chr25:33157016-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 1-292 |
| Cow position: | chr25:33298600-33298891 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 170, 176 |
| Conread position: | 1-292 |
| Cow position: | chr25:33299188-33299479 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 170, 177 |
| Conread position: | 1-293 |
| Cow position: | chr25:33299020-33299312 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-293 |
| Cow position: | chr25:33299440-33299732 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 1-294 |
| Cow position: | chr25:33157352-33157059 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr25:33298684-33298977 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr25:33298768-33299061 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr25:33299524-33299817 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr25:33305365-33305077 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-301 |
| Cow position: | chr25:23420420-23420720 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-301 |
| Cow position: | chr25:36800752-36801052 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-301 |
| Cow position: | chr25:36800836-36801136 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-303 |
| Cow position: | chr25:23420336-23420638 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-303 |
| Cow position: | chr25:33305761-33305460 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 117, 37 |
| Conread position: | 1-303 |
| Cow position: | chr25:36800668-36800970 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-313 |
| Cow position: | chr25:33299356-33299670 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 1-313 |
| Cow position: | chr25:36800920-36801234 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 294, 0 |
| Conread position: | 1-313 |
| Cow position: | chr25:36801580-36801894 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 1-320 |
| Cow position: | chr25:23420504-23420825 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 1-321 |
| Cow position: | chr25:33298936-33299258 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 1-321 |
| Cow position: | chr25:36801004-36801326 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 288, 0 |
| Conread position: | 1-389 |
| Cow position: | chr25:36801664-36802051 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 300, 307 |
| Conread position: | 2-252 |
| Cow position: | chr25:36801089-36801339 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 3-292 |
| Cow position: | chr25:33298854-33299143 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-301 |
| Cow position: | chr25:34447062-34447359 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-293 |
| Cow position: | chr25:33298520-33298808 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-294 |
| Cow position: | chr25:34769831-34769542 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-271 |
| Cow position: | chr25:34714160-34714425 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-337 |
| Cow position: | chr25:33145143-33145472 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 305, 11 |
| Conread position: | 9-320 |
| Cow position: | chr25:33305190-33304881 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 148, 73 |
| Conread position: | 12-295 |
| Cow position: | chr25:23420599-23420882 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-285 |
| Cow position: | chr25:34769991-34769719 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-292 |
| Cow position: | chr25:34769571-34769292 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-294 |
| Cow position: | chr25:18642206-18641922 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 126, 180 |
| Conread position: | 13-294 |
| Cow position: | chr25:33157256-33156975 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-294 |
| Cow position: | chr25:34714251-34714532 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 90 |
| Conread position: | 13-294 |
| Cow position: | chr25:34769907-34769626 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 13-301 |
| Cow position: | chr25:33127935-33128223 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-303 |
| Cow position: | chr25:33127767-33128057 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-303 |
| Cow position: | chr25:33127851-33128141 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-294 |
| Cow position: | chr25:33157086-33156807 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-294 |
| Cow position: | chr25:33157170-33156891 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-292 |
| Cow position: | chr25:34769736-34769460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-285 |
| Cow position: | chr25:34447159-34447427 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-293 |
| Cow position: | chr25:33144902-33145177 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 265, 133 |
| Conread position: | 17-293 |
| Cow position: | chr25:34446991-34447267 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr25:346501-346778 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 126, 116 |
| Conread position: | 17-294 |
| Cow position: | chr25:33157420-33157143 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr25:33157504-33157227 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-294 |
| Cow position: | chr25:34769651-34769374 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-301 |
| Cow position: | chr25:33299288-33299572 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 154, 160 |
| Conread position: | 17-301 |
| Cow position: | chr25:34447579-34447854 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 17-315 |
| Cow position: | chr25:326976-327276 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 18-254 |
| Cow position: | chr25:33299121-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-294 |
| Cow position: | chr25:33305828-33305556 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 19-301 |
| Cow position: | chr25:33305909-33305633 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 20-280 |
| Cow position: | chr25:36801515-36801775 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-292 |
| Cow position: | chr25:33306071-33305806 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 94 |
| Conread position: | 24-294 |
| Cow position: | chr25:34770064-34769794 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-257 |
| Cow position: | chr25:34769473-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-285 |
| Cow position: | chr25:34732545-34732287 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr25:366788-367053 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr25:36800526-36800791 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 58 |
| Conread position: | 27-294 |
| Cow position: | chr25:22235892-22236159 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-294 |
| Cow position: | chr25:34447337-34447604 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-297 |
| Cow position: | chr25:34714097-34714367 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 237, 241 |
| Conread position: | 27-301 |
| Cow position: | chr25:34447421-34447695 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr25:34447253-34447529 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr25:34770145-34769869 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-271 |
| Cow position: | chr25:34433005-34433244 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 37-283 |
| Cow position: | chr25:36801448-36801694 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 37-293 |
| Cow position: | chr25:33127707-33127963 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-294 |
| Cow position: | chr25:22235828-22236075 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 47-294 |
| Cow position: | chr25:33298478-33298725 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 105, 110 |
| Conread position: | 48-294 |
| Cow position: | chr25:34446938-34447184 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 63-292 |
| Cow position: | chr25:36800646-36800875 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-292 |
| Cow position: | chr25:23420316-23420543 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 156-301 |
| Cow position: | chr25:33127742-33127887 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.