Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-294 |
| Cow position: | chr8:45201307-45201600 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-294 |
| Cow position: | chr8:46815998-46816291 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 1-301 |
| Cow position: | chr8:45200803-45201103 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-303 |
| Cow position: | chr8:46816670-46816972 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-294 |
| Cow position: | chr8:45201562-45201852 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 249 |
| Conread position: | 4-301 |
| Cow position: | chr8:45201478-45201775 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-290 |
| Cow position: | chr8:46817094-46817379 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-292 |
| Cow position: | chr8:46816591-46816877 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-303 |
| Cow position: | chr8:46816339-46816636 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-292 |
| Cow position: | chr8:45201146-45201430 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-292 |
| Cow position: | chr8:46816089-46816373 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-301 |
| Cow position: | chr8:46816929-46817222 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-304 |
| Cow position: | chr8:46817013-46817311 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 0 |
| Conread position: | 9-285 |
| Cow position: | chr8:48407249-48406973 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 173, 165 |
| Conread position: | 9-294 |
| Cow position: | chr8:46816258-46816543 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-301 |
| Cow position: | chr8:46816510-46816802 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-301 |
| Cow position: | chr8:46816762-46817054 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 13-292 |
| Cow position: | chr8:55580955-55581234 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-294 |
| Cow position: | chr8:48407413-48407132 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-303 |
| Cow position: | chr8:45201235-45201525 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-303 |
| Cow position: | chr8:55581123-55581413 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-316 |
| Cow position: | chr8:46816430-46816735 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 280, 0 |
| Conread position: | 17-283 |
| Cow position: | chr8:55581295-55581561 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-292 |
| Cow position: | chr8:45200987-45201262 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-293 |
| Cow position: | chr8:55581463-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-303 |
| Cow position: | chr8:55581043-55581329 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-294 |
| Cow position: | chr8:48407575-48407300 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-313 |
| Cow position: | chr8:45200906-45201201 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 27-239 |
| Cow position: | chr8:48406979-48406767 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 27-273 |
| Cow position: | chr8:45201753-45201999 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-288 |
| Cow position: | chr8:48406559-48406298 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 27-292 |
| Cow position: | chr8:45201669-45201934 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr8:46816192-46816457 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chr8:46816864-46817129 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 91, 97 |
| Conread position: | 27-292 |
| Cow position: | chr8:55581221-55581486 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-294 |
| Cow position: | chr8:45201417-45201684 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-294 |
| Cow position: | chr8:48407147-48406880 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 27-294 |
| Cow position: | chr8:48407315-48407048 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 239, 233 |
| Conread position: | 27-294 |
| Cow position: | chr8:48407483-48407216 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-301 |
| Cow position: | chr8:48407063-48406789 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr8:45201081-45201357 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chr8:48406643-48406367 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-316 |
| Cow position: | chr8:46815940-46816231 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 33-303 |
| Cow position: | chr8:55580891-55581161 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-294 |
| Cow position: | chr8:55580808-55581068 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 231, 223 |
| Conread position: | 48-294 |
| Cow position: | chr8:48407630-48407384 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 217, 210 |
| Conread position: | 69-292 |
| Cow position: | chr8:6958059-6957836 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.