Cow genome map
| Conread name: | Ss1.1-Emb1-C0005194_J10.5 |
| Conread position: | 1-249 |
| Cow position: | chrX:29045622-29045374 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-294 |
| Cow position: | chrX:25309760-25310052 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 5-294 |
| Cow position: | chrX:29045702-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 138, 130 |
| Conread position: | 5-301 |
| Cow position: | chrX:25324790-25324494 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-303 |
| Cow position: | chrX:25324706-25324408 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-303 |
| Cow position: | chrX:25325041-25324744 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-301 |
| Cow position: | chrX:29044965-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-292 |
| Cow position: | chrX:25325291-25325007 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 189 |
| Conread position: | 8-301 |
| Cow position: | chrX:29045216-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-303 |
| Cow position: | chrX:25310186-25310481 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-234 |
| Cow position: | chrX:29044879-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-292 |
| Cow position: | chrX:25309935-25310218 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-292 |
| Cow position: | chrX:25310019-25310302 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-294 |
| Cow position: | chrX:25309850-25310136 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 9-294 |
| Cow position: | chrX:25324450-25324169 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 9-301 |
| Cow position: | chrX:25324870-25324578 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-313 |
| Cow position: | chrX:25310103-25310409 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 9-313 |
| Cow position: | chrX:25310271-25310577 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 271, 256 |
| Conread position: | 9-316 |
| Cow position: | chrX:29045047-29044738 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 10-292 |
| Cow position: | chrX:25324953-25324671 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-303 |
| Cow position: | chrX:25325538-25325248 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-303 |
| Cow position: | chrX:25325366-25325080 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 18-292 |
| Cow position: | chrX:25325785-25325511 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 166, 180 |
| Conread position: | 18-303 |
| Cow position: | chrX:29045122-29044837 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-241 |
| Cow position: | chrX:25310373-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 207, 0 |
| Conread position: | 27-292 |
| Cow position: | chrX:25325104-25324839 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-292 |
| Cow position: | chrX:25325188-25324923 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-297 |
| Cow position: | chrX:25324600-25324330 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chrX:25324516-25324240 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chrX:25325692-25325416 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-303 |
| Cow position: | chrX:29045281-29045005 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-292 |
| Cow position: | chrX:25325606-25325343 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-301 |
| Cow position: | chrX:29045762-29045490 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-321 |
| Cow position: | chrX:25309705-25309997 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 33-303 |
| Cow position: | chrX:25325434-25325164 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 66-303 |
| Cow position: | chrX:29045809-29045572 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.