Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-606 |
| Cow position: | chr13:56292806-56292200 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 245, 31 |
| Conread position: | 1-697 |
| Cow position: | chr13:39984038-39984734 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-697 |
| Cow position: | chr13:39984122-39984818 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-1001 |
| Cow position: | chr13:39984206-39985197 (view UCSC Genome Browser custom track) |
| Alignm length: | 1013 |
| Alignm identity: | 889 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 757, 714 |
| Conread position: | 2-697 |
| Cow position: | chr13:39983955-39984650 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-373 |
| Cow position: | chr13:56333942-56334319 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 114, 168 |
| Conread position: | 8-452 |
| Cow position: | chr13:39930709-39931153 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 245, 241 |
| Conread position: | 8-582 |
| Cow position: | chr13:56333693-56334276 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 158, 147 |
| Conread position: | 8-695 |
| Cow position: | chr13:22124906-22125593 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 395 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 31 |
| Conread position: | 8-697 |
| Cow position: | chr13:39983877-39984566 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 531 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-321 |
| Cow position: | chr13:56292136-56291823 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 9-697 |
| Cow position: | chr13:56333526-56334223 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 10-697 |
| Cow position: | chr13:56292549-56291868 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 13-552 |
| Cow position: | chr13:22125079-22125618 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 310 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 43 |
| Conread position: | 13-552 |
| Cow position: | chr13:39930630-39931167 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 240, 236 |
| Conread position: | 13-659 |
| Cow position: | chr13:22124743-22125389 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 13-659 |
| Cow position: | chr13:24162469-24163115 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 61 |
| Conread position: | 20-673 |
| Cow position: | chr13:56333621-56334283 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 153 |
| Conread position: | 32-405 |
| Cow position: | chr13:56292194-56291823 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 336, 38 |
| Conread position: | 38-658 |
| Cow position: | chr13:56292438-56291822 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 384 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 219 |
| Conread position: | 53-573 |
| Cow position: | chr13:56292333-56291823 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 326 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 114 |
| Conread position: | 54-552 |
| Cow position: | chr13:24162846-24163344 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 284 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 56-697 |
| Cow position: | chr13:39983841-39984482 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-406 |
| Cow position: | chr13:56317923-56318243 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 159, 140 |
| Conread position: | 90-694 |
| Cow position: | chr13:39983707-39984311 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 92-573 |
| Cow position: | chr13:29183760-29183283 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 197, 61 |
| Conread position: | 94-629 |
| Cow position: | chr13:39930627-39931160 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 159, 155 |
| Conread position: | 103-696 |
| Cow position: | chr13:39983804-39984397 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 117-561 |
| Cow position: | chr13:56317350-56317785 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 157-487 |
| Cow position: | chr13:56317910-56318240 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 174-691 |
| Cow position: | chr13:56292722-56292199 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 164, 202 |
| Conread position: | 174-694 |
| Cow position: | chr13:56333523-56334043 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 310 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 86, 64 |
| Conread position: | 181-696 |
| Cow position: | chr13:39930630-39931145 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 313 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 68 |
| Conread position: | 181-714 |
| Cow position: | chr13:39983714-39984247 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 208-693 |
| Cow position: | chr13:56317356-56317833 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 198, 124 |
| Conread position: | 211-696 |
| Cow position: | chr13:56292848-56292368 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 276, 73 |
| Conread position: | 222-697 |
| Cow position: | chr13:39930587-39931062 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 355, 361 |
| Conread position: | 254-587 |
| Cow position: | chr13:56317923-56318258 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 157, 139 |
| Conread position: | 289-704 |
| Cow position: | chr13:56317879-56318295 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 112, 22 |
Show alignments to all cow chromosomes.