Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-467 |
| Cow position: | chr17:22498918-22498461 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 322, 330 |
| Conread position: | 5-697 |
| Cow position: | chr17:22473230-22473919 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 33 |
| Conread position: | 6-549 |
| Cow position: | chr17:22499081-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 318 |
| Conread position: | 7-393 |
| Cow position: | chr17:22551865-22551479 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-658 |
| Cow position: | chr17:22452402-22451751 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 7-697 |
| Cow position: | chr17:22552537-22551847 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 461 |
| Conread position: | 8-276 |
| Cow position: | chr17:22589450-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 60, 86 |
| Conread position: | 8-386 |
| Cow position: | chr17:22451981-22451603 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 193, 200 |
| Conread position: | 8-633 |
| Cow position: | chr17:22499163-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 208 |
| Conread position: | 8-644 |
| Cow position: | chr17:22552116-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 376 |
| Conread position: | 8-697 |
| Cow position: | chr17:22499331-22498642 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 292 |
| Conread position: | 8-697 |
| Cow position: | chr17:22552620-22551931 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 8-697 |
| Cow position: | chr17:22552788-22552099 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 164 |
| Conread position: | 8-697 |
| Cow position: | chr17:22552956-22552267 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 323 |
| Conread position: | 8-697 |
| Cow position: | chr17:22553040-22552351 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 461 |
| Conread position: | 8-697 |
| Cow position: | chr17:22589954-22589265 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 8-698 |
| Cow position: | chr17:22552368-22551678 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 376 |
| Conread position: | 8-704 |
| Cow position: | chr17:22499247-22498551 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 232 |
| Conread position: | 9-469 |
| Cow position: | chr17:22452064-22451604 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-487 |
| Cow position: | chr17:22473483-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 9-572 |
| Cow position: | chr17:41440806-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 87, 97 |
| Conread position: | 9-617 |
| Cow position: | chr17:22589701-22589095 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 332 |
| Conread position: | 9-652 |
| Cow position: | chr17:22452316-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 322 |
| Conread position: | 9-697 |
| Cow position: | chr17:22552283-22551595 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 291 |
| Conread position: | 9-697 |
| Cow position: | chr17:22552451-22551763 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 9-697 |
| Cow position: | chr17:22552703-22552015 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 9-697 |
| Cow position: | chr17:22552871-22552183 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 588 |
| Conread position: | 13-659 |
| Cow position: | chr17:22589865-22589219 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 334 |
| Conread position: | 13-704 |
| Cow position: | chr17:22552195-22551504 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 203 |
| Conread position: | 16-698 |
| Cow position: | chr17:41441051-41440369 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 390 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 18-697 |
| Cow position: | chr17:22590196-22589517 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 325 |
| Conread position: | 20-655 |
| Cow position: | chr17:22473326-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 224 |
| Conread position: | 20-655 |
| Cow position: | chr17:22590278-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 196 |
| Conread position: | 21-704 |
| Cow position: | chr17:22590109-22589426 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 30-697 |
| Cow position: | chr17:22499393-22498726 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-697 |
| Cow position: | chr17:22553102-22552435 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 445, 438 |
| Conread position: | 54-658 |
| Cow position: | chr17:41441097-41440493 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 346 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 64-697 |
| Cow position: | chr17:22452513-22451880 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 404 |
| Conread position: | 71-697 |
| Cow position: | chr17:22473212-22473835 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 51 |
| Conread position: | 82-688 |
| Cow position: | chr17:22452411-22451805 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 250 |
| Conread position: | 85-660 |
| Cow position: | chr17:22590297-22589722 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 215 |
| Conread position: | 99-656 |
| Cow position: | chr17:22553117-22552560 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 369 |
| Conread position: | 117-698 |
| Cow position: | chr17:41441118-41440537 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 338 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 106, 99 |
| Conread position: | 155-658 |
| Cow position: | chr17:22590311-22589808 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 229 |
| Conread position: | 195-697 |
| Cow position: | chr17:22553105-22552603 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 97 |
| Conread position: | 253-697 |
| Cow position: | chr17:22590297-22589853 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 261-697 |
| Cow position: | chr17:22499414-22498978 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 262-697 |
| Cow position: | chr17:22553122-22552687 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 312, 328 |
Show alignments to all cow chromosomes.