Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-288 |
| Cow position: | chr19:14959106-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 253, 238 |
| Conread position: | 1-515 |
| Cow position: | chr19:43570166-43569656 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 381 |
| Conread position: | 1-623 |
| Cow position: | chr19:23649864-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 215 |
| Conread position: | 1-658 |
| Cow position: | chr19:14959511-14958869 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 154 |
| Conread position: | 1-658 |
| Cow position: | chr19:14959677-14959037 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 28 |
| Conread position: | 1-694 |
| Cow position: | chr19:20677589-20678282 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 73 |
| Conread position: | 1-694 |
| Cow position: | chr19:23614414-23615107 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 332 |
| Conread position: | 1-697 |
| Cow position: | chr19:14940298-14940994 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-697 |
| Cow position: | chr19:23596922-23597615 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 111 |
| Conread position: | 1-697 |
| Cow position: | chr19:23613826-23614522 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 580, 594 |
| Conread position: | 1-715 |
| Cow position: | chr19:23613490-23614208 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 322 |
| Conread position: | 1-722 |
| Cow position: | chr19:23614162-23614885 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 248 |
| Conread position: | 3-697 |
| Cow position: | chr19:14940135-14940826 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 5 |
| Conread position: | 6-368 |
| Cow position: | chr19:14959179-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 317, 60 |
| Conread position: | 6-520 |
| Cow position: | chr19:14940555-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-697 |
| Cow position: | chr19:14959590-14958914 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 233 |
| Conread position: | 7-587 |
| Cow position: | chr19:14940472-14941052 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-697 |
| Cow position: | chr19:14960159-14959487 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 10 |
| Conread position: | 7-697 |
| Cow position: | chr19:23613748-23614438 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 323 |
| Conread position: | 8-373 |
| Cow position: | chr19:23597346-23597711 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 8-449 |
| Cow position: | chr19:23597262-23597702 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 241 |
| Conread position: | 8-461 |
| Cow position: | chr19:20635400-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 293 |
| Conread position: | 8-658 |
| Cow position: | chr19:23614337-23614987 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 8-659 |
| Cow position: | chr19:14960410-14959763 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 8-690 |
| Cow position: | chr19:23614085-23614767 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 663, 652 |
| Conread position: | 8-696 |
| Cow position: | chr19:23649451-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 245 |
| Conread position: | 8-697 |
| Cow position: | chr19:23613413-23614102 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 668, 653 |
| Conread position: | 8-697 |
| Cow position: | chr19:23614253-23614942 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 231 |
| Conread position: | 8-722 |
| Cow position: | chr19:20678018-20678733 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 691, 12 |
| Conread position: | 9-453 |
| Cow position: | chr19:23614674-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 9-489 |
| Cow position: | chr19:14948484-14948005 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 84 |
| Conread position: | 9-545 |
| Cow position: | chr19:20635483-20634950 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 231 |
| Conread position: | 9-613 |
| Cow position: | chr19:43570242-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 457 |
| Conread position: | 9-620 |
| Cow position: | chr19:14959419-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 459, 114 |
| Conread position: | 9-632 |
| Cow position: | chr19:23597095-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 323 |
| Conread position: | 9-657 |
| Cow position: | chr19:14959991-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 177 |
| Conread position: | 9-657 |
| Cow position: | chr19:23613582-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 314 |
| Conread position: | 9-657 |
| Cow position: | chr19:23649788-23650436 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 324 |
| Conread position: | 9-659 |
| Cow position: | chr19:14940390-14941040 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 9-696 |
| Cow position: | chr19:14940222-14940909 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-696 |
| Cow position: | chr19:14960075-14959404 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 163 |
| Conread position: | 9-697 |
| Cow position: | chr19:23613918-23614606 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 398 |
| Conread position: | 9-705 |
| Cow position: | chr19:20677513-20678209 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 244 |
| Conread position: | 10-697 |
| Cow position: | chr19:14940057-14940742 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 560, 7 |
| Conread position: | 13-697 |
| Cow position: | chr19:23613670-23614354 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 310 |
| Conread position: | 13-697 |
| Cow position: | chr19:23649624-23650308 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 455 |
| Conread position: | 17-697 |
| Cow position: | chr19:23649544-23650224 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 315 |
| Conread position: | 18-655 |
| Cow position: | chr19:20677858-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 178 |
| Conread position: | 18-687 |
| Cow position: | chr19:43570391-43569732 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 107 |
| Conread position: | 18-697 |
| Cow position: | chr19:20677690-20678369 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 18-697 |
| Cow position: | chr19:20677774-20678453 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 234 |
| Conread position: | 19-698 |
| Cow position: | chr19:23649714-23650393 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 230 |
| Conread position: | 20-634 |
| Cow position: | chr19:20635640-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 307 |
| Conread position: | 20-656 |
| Cow position: | chr19:20677440-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 307 |
| Conread position: | 20-657 |
| Cow position: | chr19:23614013-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 313 |
| Conread position: | 21-554 |
| Cow position: | chr19:20635555-20635022 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 155 |
| Conread position: | 21-697 |
| Cow position: | chr19:20677945-20678621 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 499 |
| Conread position: | 28-655 |
| Cow position: | chr19:14939989-14940616 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-697 |
| Cow position: | chr19:23649303-23649972 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 403 |
| Conread position: | 29-697 |
| Cow position: | chr19:23613350-23614018 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 224 |
| Conread position: | 29-697 |
| Cow position: | chr19:23649388-23650056 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-697 |
| Cow position: | chr19:20677289-20677949 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 72 |
| Conread position: | 41-657 |
| Cow position: | chr19:20677377-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 286 |
| Conread position: | 53-650 |
| Cow position: | chr19:14959709-14959123 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 58 |
| Conread position: | 54-694 |
| Cow position: | chr19:14960448-14959810 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 60-659 |
| Cow position: | chr19:23597062-23597662 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 324 |
| Conread position: | 81-697 |
| Cow position: | chr19:14939959-14940574 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 16 |
| Conread position: | 84-540 |
| Cow position: | chr19:14959269-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 148 |
| Conread position: | 92-715 |
| Cow position: | chr19:23649283-23649910 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 607, 0 |
| Conread position: | 98-697 |
| Cow position: | chr19:20635646-20635047 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 247 |
| Conread position: | 99-697 |
| Cow position: | chr19:43570394-43569806 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 116 |
| Conread position: | 110-659 |
| Cow position: | chr19:14915961-14916499 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 7 |
| Conread position: | 111-697 |
| Cow position: | chr19:14960475-14959891 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 326 |
| Conread position: | 165-697 |
| Cow position: | chr19:23596833-23597363 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 199 |
| Conread position: | 177-658 |
| Cow position: | chr19:14948484-14948004 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 84 |
| Conread position: | 196-697 |
| Cow position: | chr19:20635715-20635215 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 261-694 |
| Cow position: | chr19:14948484-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 349-698 |
| Cow position: | chr19:23596850-23597196 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 447-704 |
| Cow position: | chr19:14960475-14960218 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.