Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-697 |
| Cow position: | chr2:82799498-82800194 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 246 |
| Conread position: | 1-697 |
| Cow position: | chr2:82799582-82800278 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-269 |
| Cow position: | chr2:82800177-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 8-624 |
| Cow position: | chr2:78755815-78756428 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 370 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 219, 244 |
| Conread position: | 8-655 |
| Cow position: | chr2:78754409-78755038 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 32 |
| Conread position: | 8-659 |
| Cow position: | chr2:86465163-86465812 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 9 |
| Conread position: | 8-661 |
| Cow position: | chr2:86465077-86465730 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 264 |
| Conread position: | 8-661 |
| Cow position: | chr2:86465667-86466315 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 9 |
| Conread position: | 8-697 |
| Cow position: | chr2:78754895-78755582 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 239 |
| Conread position: | 8-699 |
| Cow position: | chr2:78754979-78755668 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 9-657 |
| Cow position: | chr2:82799674-82800322 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 9-695 |
| Cow position: | chr2:86465498-86466184 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 71 |
| Conread position: | 13-615 |
| Cow position: | chr2:82799846-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 318 |
| Conread position: | 13-662 |
| Cow position: | chr2:78755736-78756384 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 174 |
| Conread position: | 20-655 |
| Cow position: | chr2:78754823-78755457 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 21-658 |
| Cow position: | chr2:82799770-82800407 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 310 |
| Conread position: | 21-694 |
| Cow position: | chr2:78755495-78756166 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 24 |
| Conread position: | 21-697 |
| Cow position: | chr2:78755160-78755832 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 177 |
| Conread position: | 21-697 |
| Cow position: | chr2:86465426-86466102 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 231 |
| Conread position: | 28-659 |
| Cow position: | chr2:78754177-78754802 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 265 |
| Conread position: | 44-697 |
| Cow position: | chr2:82799457-82800110 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 286 |
| Conread position: | 90-646 |
| Cow position: | chr2:5874953-5874397 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 59, 78 |
| Conread position: | 91-704 |
| Cow position: | chr2:86465076-86465689 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 231 |
| Conread position: | 98-697 |
| Cow position: | chr2:78754817-78755415 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 236 |
| Conread position: | 111-657 |
| Cow position: | chr2:78754176-78754719 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 298, 266 |
| Conread position: | 115-697 |
| Cow position: | chr2:5875180-5874598 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 117-582 |
| Cow position: | chr2:48689538-48689073 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 102 |
| Conread position: | 117-696 |
| Cow position: | chr2:78754101-78754675 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 350 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 206, 70 |
| Conread position: | 138-698 |
| Cow position: | chr2:82799467-82800027 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 193 |
| Conread position: | 147-697 |
| Cow position: | chr2:86465048-86465598 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 93 |
| Conread position: | 150-656 |
| Cow position: | chr2:86464967-86465473 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 339, 374 |
| Conread position: | 200-698 |
| Cow position: | chr2:82799447-82799943 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 11 |
| Conread position: | 281-661 |
| Cow position: | chr2:48689541-48689162 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 56 |
Show alignments to all cow chromosomes.