Cow genome map

Conread name: Ss1.1-Emb1-C0005211_J19.5

Conread position: 1-286
Cow position: chr22:46654573-46654859 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 275, 0

Conread position: 1-363
Cow position: chr22:12399116-12398754 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 235
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 1-367
Cow position: chr22:12385274-12384908 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 239
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-540
Cow position: chr22:12475829-12475290 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-540
Cow position: chr22:12499430-12499969 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-573
Cow position: chr22:14441932-14442504 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 178

Conread position: 1-623
Cow position: chr22:12458384-12457762 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 336

Conread position: 1-656
Cow position: chr22:14468031-14468685 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 251

Conread position: 1-696
Cow position: chr22:12399452-12398757 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 79

Conread position: 1-696
Cow position: chr22:46654069-46654764 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 82

Conread position: 1-697
Cow position: chr22:12399788-12399092 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 330, 321

Conread position: 1-697
Cow position: chr22:12475997-12475301 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 333

Conread position: 1-704
Cow position: chr22:12499262-12499965 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 330

Conread position: 3-623
Cow position: chr22:46654239-46654860 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 80

Conread position: 3-700
Cow position: chr22:12544471-12545168 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 411
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 47

Conread position: 6-658
Cow position: chr22:11640751-11641403 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 95

Conread position: 6-704
Cow position: chr22:14429791-14430489 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 405

Conread position: 7-572
Cow position: chr22:12431174-12430609 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 233

Conread position: 7-638
Cow position: chr22:14430296-14430927 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 160

Conread position: 7-656
Cow position: chr22:14429960-14430609 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 67

Conread position: 7-658
Cow position: chr22:14467953-14468604 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 328

Conread position: 7-659
Cow position: chr22:12498932-12499584 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 329

Conread position: 8-321
Cow position: chr22:11666594-11666907 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 199
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 34

Conread position: 8-412
Cow position: chr22:14430635-14431029 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 270
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 81, 12

Conread position: 8-455
Cow position: chr22:12399193-12398746 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 314

Conread position: 8-694
Cow position: chr22:46654160-46654846 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 320

Conread position: 8-696
Cow position: chr22:12385689-12384999 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 24

Conread position: 8-697
Cow position: chr22:12399613-12398924 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 240

Conread position: 8-697
Cow position: chr22:12431845-12431156 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 178

Conread position: 8-697
Cow position: chr22:12499101-12499790 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 176

Conread position: 8-697
Cow position: chr22:14442025-14442709 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 9

Conread position: 8-699
Cow position: chr22:12458545-12457854 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 323

Conread position: 8-703
Cow position: chr22:12431341-12430645 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 591, 580

Conread position: 9-535
Cow position: chr22:12385436-12384908 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 9-615
Cow position: chr22:12399360-12398754 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 322

Conread position: 9-622
Cow position: chr22:12475905-12475292 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 413

Conread position: 9-622
Cow position: chr22:12499354-12499967 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 587, 577

Conread position: 9-625
Cow position: chr22:11640838-11641454 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 65

Conread position: 9-649
Cow position: chr22:12432432-12431792 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 345

Conread position: 9-657
Cow position: chr22:12432264-12431616 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 325

Conread position: 9-658
Cow position: chr22:12385604-12384953 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 330

Conread position: 9-658
Cow position: chr22:14429710-14430359 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 497, 486

Conread position: 9-659
Cow position: chr22:12476325-12475675 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 177

Conread position: 9-690
Cow position: chr22:14429878-14430559 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 65

Conread position: 9-696
Cow position: chr22:12431928-12431241 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 326

Conread position: 9-697
Cow position: chr22:11640670-11641358 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 9-697
Cow position: chr22:12399528-12398840 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 71

Conread position: 9-697
Cow position: chr22:12399696-12399008 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 239

Conread position: 9-697
Cow position: chr22:12431508-12430820 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 64

Conread position: 9-697
Cow position: chr22:14430214-14430902 (view UCSC Genome Browser custom track)
Alignm length: 696
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 62

Conread position: 9-698
Cow position: chr22:12419232-12418526 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 476

Conread position: 9-715
Cow position: chr22:12458460-12457755 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 30

Conread position: 10-697
Cow position: chr22:12458627-12457940 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 206

Conread position: 13-534
Cow position: chr22:12418959-12418439 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 203

Conread position: 13-655
Cow position: chr22:12499190-12499832 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 59

Conread position: 13-660
Cow position: chr22:12432092-12431445 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 61

Conread position: 13-697
Cow position: chr22:12476069-12475385 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 327

Conread position: 18-535
Cow position: chr22:12399267-12398750 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 319

Conread position: 18-697
Cow position: chr22:12476232-12475553 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 55

Conread position: 18-697
Cow position: chr22:12499027-12499706 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 55

Conread position: 18-715
Cow position: chr22:46654002-46654699 (view UCSC Genome Browser custom track)
Alignm length: 700
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 483

Conread position: 19-452
Cow position: chr22:12385340-12384907 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 65

Conread position: 23-657
Cow position: chr22:14429640-14430274 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 25-696
Cow position: chr22:12432164-12431493 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 312

Conread position: 25-696
Cow position: chr22:12432332-12431661 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 310

Conread position: 28-697
Cow position: chr22:12476390-12475721 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 168

Conread position: 28-697
Cow position: chr22:12498869-12499538 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 159

Conread position: 28-704
Cow position: chr22:12432497-12431821 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 297

Conread position: 30-697
Cow position: chr22:12476136-12475469 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 154

Conread position: 38-698
Cow position: chr22:14429493-14430147 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 5

Conread position: 41-573
Cow position: chr22:12419015-12418483 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 321
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 367, 374

Conread position: 44-655
Cow position: chr22:12399829-12399218 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 194

Conread position: 53-490
Cow position: chr22:11666471-11666908 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 274
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 101, 110

Conread position: 53-622
Cow position: chr22:11701125-11701694 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 350
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 102, 112

Conread position: 53-658
Cow position: chr22:14442236-14442829 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 31

Conread position: 77-697
Cow position: chr22:11640654-11641274 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 87

Conread position: 80-694
Cow position: chr22:12458641-12458027 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 89-659
Cow position: chr22:12498846-12499416 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 242

Conread position: 90-697
Cow position: chr22:12385691-12385082 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 21

Conread position: 104-697
Cow position: chr22:46653920-46654513 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 399

Conread position: 111-655
Cow position: chr22:12432498-12431954 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 467, 473

Conread position: 111-659
Cow position: chr22:12476391-12475843 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 220

Conread position: 117-695
Cow position: chr22:12419023-12418445 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 267

Conread position: 129-621
Cow position: chr22:11666463-11666955 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 297
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 27, 35

Conread position: 129-657
Cow position: chr22:11701117-11701645 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 322
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 27, 35

Conread position: 137-697
Cow position: chr22:12399898-12399344 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 137-698
Cow position: chr22:14441900-14442461 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 346
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 205, 195

Conread position: 138-656
Cow position: chr22:11640631-11641149 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 56

Conread position: 142-696
Cow position: chr22:14467920-14468474 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 10

Conread position: 175-697
Cow position: chr22:12476411-12475889 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 180

Conread position: 175-697
Cow position: chr22:12498848-12499370 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 180

Conread position: 195-695
Cow position: chr22:12432498-12431998 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 387

Conread position: 197-696
Cow position: chr22:12545412-12545893 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 308
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 19

Conread position: 207-697
Cow position: chr22:11640616-11641106 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 230

Conread position: 210-658
Cow position: chr22:14441889-14442337 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 278
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 126, 114

Conread position: 211-697
Cow position: chr22:12399908-12399428 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 69

Conread position: 236-657
Cow position: chr22:12419341-12418903 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 241
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 255, 0

Conread position: 251-722
Cow position: chr22:12458638-12458165 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 217

Conread position: 261-657
Cow position: chr22:11666511-11666907 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 255
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 84, 63

Conread position: 278-688
Cow position: chr22:12432499-12432089 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 284-651
Cow position: chr22:11701104-11701471 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 222
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 38

Conread position: 284-697
Cow position: chr22:11666450-11666863 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 252
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 38

Conread position: 294-696
Cow position: chr22:14441889-14442291 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 248
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 216, 206

Conread position: 322-659
Cow position: chr22:12458651-12458314 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 219
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 327-694
Cow position: chr22:12476427-12476060 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 230
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 245, 252

Conread position: 447-715
Cow position: chr22:12432498-12432226 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 179
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 59

Show alignments to all cow chromosomes.