Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-353 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-522 |
| Cow position: | |
| Alignm length: | 525 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 1-550 |
| Cow position: | |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-654 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 413 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 263, 422 |
| Conread position: | 1-694 |
| Cow position: | |
| Alignm length: | 697 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 182 |
| Conread position: | 1-697 |
| Cow position: | |
| Alignm length: | 698 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 365 |
| Conread position: | 6-643 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 623, 614 |
| Conread position: | 7-291 |
| Cow position: | |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-321 |
| Cow position: | |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 7-371 |
| Cow position: | |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-573 |
| Cow position: | |
| Alignm length: | 571 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 210 |
| Conread position: | 7-656 |
| Cow position: | |
| Alignm length: | 654 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 101 |
| Conread position: | 8-381 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 315, 9 |
| Conread position: | 8-394 |
| Cow position: | |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 369, 360 |
| Conread position: | 8-464 |
| Cow position: | |
| Alignm length: | 458 |
| Alignm identity: | 285 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 454, 0 |
| Conread position: | 8-493 |
| Cow position: | |
| Alignm length: | 488 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 313, 328 |
| Conread position: | 8-611 |
| Cow position: | |
| Alignm length: | 619 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 0 |
| Conread position: | 8-697 |
| Cow position: | |
| Alignm length: | 692 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 434 |
| Conread position: | 9-383 |
| Cow position: | |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 9-455 |
| Cow position: | |
| Alignm length: | 447 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-635 |
| Cow position: | |
| Alignm length: | 629 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 154 |
| Conread position: | 9-656 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 13-493 |
| Cow position: | |
| Alignm length: | 484 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 319 |
| Conread position: | 13-538 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-548 |
| Cow position: | |
| Alignm length: | 538 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 489 |
| Conread position: | 18-573 |
| Cow position: | |
| Alignm length: | 559 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 18-575 |
| Cow position: | |
| Alignm length: | 560 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 403 |
| Conread position: | 18-696 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-696 |
| Cow position: | |
| Alignm length: | 682 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 471, 228 |
| Conread position: | 20-697 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 572 |
| Conread position: | 21-308 |
| Cow position: | |
| Alignm length: | 288 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-467 |
| Cow position: | |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 23-657 |
| Cow position: | |
| Alignm length: | 639 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 482 |
| Conread position: | 28-697 |
| Cow position: | |
| Alignm length: | 672 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 440 |
| Conread position: | 43-392 |
| Cow position: | |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-465 |
| Cow position: | |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 45-696 |
| Cow position: | |
| Alignm length: | 656 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 286 |
| Conread position: | 53-708 |
| Cow position: | |
| Alignm length: | 656 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 636, 0 |
| Conread position: | 54-623 |
| Cow position: | |
| Alignm length: | 572 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 277 |
| Conread position: | 54-624 |
| Cow position: | |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 277 |
| Conread position: | 55-686 |
| Cow position: | |
| Alignm length: | 635 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 162 |
| Conread position: | 82-553 |
| Cow position: | |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 89-673 |
| Cow position: | |
| Alignm length: | 591 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 7 |
| Conread position: | 91-659 |
| Cow position: | |
| Alignm length: | 570 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 480, 496 |
| Conread position: | 92-689 |
| Cow position: | |
| Alignm length: | 604 |
| Alignm identity: | 370 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 61, 65 |
| Conread position: | 113-697 |
| Cow position: | |
| Alignm length: | 587 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 485 |
| Conread position: | 114-697 |
| Cow position: | |
| Alignm length: | 589 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 23 |
| Conread position: | 128-674 |
| Cow position: | |
| Alignm length: | 548 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 164 |
| Conread position: | 128-696 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-487 |
| Cow position: | |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 278, 291 |
| Conread position: | 166-635 |
| Cow position: | |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 175-697 |
| Cow position: | |
| Alignm length: | 526 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 191-697 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 171, 14 |
| Conread position: | 196-696 |
| Cow position: | |
| Alignm length: | 506 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 49 |
| Conread position: | 207-529 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 213-611 |
| Cow position: | |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 300 |
| Conread position: | 250-699 |
| Cow position: | |
| Alignm length: | 451 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 257-697 |
| Cow position: | |
| Alignm length: | 442 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 397, 408 |
| Conread position: | 265-658 |
| Cow position: | |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-722 |
| Cow position: | |
| Alignm length: | 449 |
| Alignm identity: | 283 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 277-570 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 130, 134 |
| Conread position: | 283-644 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 297-697 |
| Cow position: | |
| Alignm length: | 405 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 343-696 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 352-696 |
| Cow position: | |
| Alignm length: | 345 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 359-697 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 237, 218 |
| Conread position: | 375-697 |
| Cow position: | |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 215, 207 |
| Conread position: | 418-697 |
| Cow position: | |
| Alignm length: | 281 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 428-697 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 85 |
| Conread position: | 433-697 |
| Cow position: | |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 165 |
Show alignments to all cow chromosomes.