Cow genome map

Conread name: Ss1.1-Emb1-C0005211_J19.5

Conread position: 1-353
Cow position: chr23:25698432-25698080 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-522
Cow position: chr23:24639608-24640128 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 47

Conread position: 1-550
Cow position: chr23:24639524-24640073 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-654
Cow position: chr23:24522428-24521773 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 413
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 263, 422

Conread position: 1-694
Cow position: chr23:25626254-25626944 (view UCSC Genome Browser custom track)
Alignm length: 697
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 182

Conread position: 1-697
Cow position: chr23:25626170-25626863 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 365

Conread position: 6-643
Cow position: chr23:24547269-24546632 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 623, 614

Conread position: 7-291
Cow position: chr23:24626454-24626738 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 7-321
Cow position: chr23:24535731-24535416 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 282, 0

Conread position: 7-371
Cow position: chr23:24560492-24560128 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-573
Cow position: chr23:25698678-25698112 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 210

Conread position: 7-656
Cow position: chr23:24639278-24639927 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 101

Conread position: 8-381
Cow position: chr23:25724062-25723692 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 250
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 315, 9

Conread position: 8-394
Cow position: chr23:24547015-24546629 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 369, 360

Conread position: 8-464
Cow position: chr23:25660298-25660755 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 285
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 454, 0

Conread position: 8-493
Cow position: chr23:24535898-24535412 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 302
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 313, 328

Conread position: 8-611
Cow position: chr23:24522589-24521971 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 0

Conread position: 8-697
Cow position: chr23:25626093-25626779 (view UCSC Genome Browser custom track)
Alignm length: 692
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 434

Conread position: 9-383
Cow position: chr23:24626372-24626744 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 9-455
Cow position: chr23:25626595-25627041 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-635
Cow position: chr23:24639448-24640074 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 154

Conread position: 9-656
Cow position: chr23:24639364-24640011 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 25

Conread position: 13-493
Cow position: chr23:24560570-24560091 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 319

Conread position: 13-538
Cow position: chr23:24560654-24560129 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-548
Cow position: chr23:25660219-25660755 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 482, 489

Conread position: 18-573
Cow position: chr23:24522744-24522192 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 54

Conread position: 18-575
Cow position: chr23:24535972-24535414 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 403

Conread position: 18-696
Cow position: chr23:24560817-24560139 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-696
Cow position: chr23:25626355-25627030 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 471, 228

Conread position: 20-697
Cow position: chr23:24560899-24560222 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 572

Conread position: 21-308
Cow position: chr23:24654109-24654396 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 181
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 23-467
Cow position: chr23:24626302-24626744 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 19

Conread position: 23-657
Cow position: chr23:24536051-24535416 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 466, 482

Conread position: 28-697
Cow position: chr23:25626029-25626695 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 444, 440

Conread position: 43-392
Cow position: chr23:24654047-24654396 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 228
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 45-465
Cow position: chr23:25724111-25723692 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 127

Conread position: 45-696
Cow position: chr23:24639232-24639883 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 286

Conread position: 53-708
Cow position: chr23:24547306-24546653 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 636, 0

Conread position: 54-623
Cow position: chr23:24560697-24560128 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 277

Conread position: 54-624
Cow position: chr23:25660176-25660746 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 277

Conread position: 55-686
Cow position: chr23:24522791-24522163 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 162

Conread position: 82-553
Cow position: chr23:24626277-24626746 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 30

Conread position: 89-673
Cow position: chr23:25660127-25660711 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 7

Conread position: 91-659
Cow position: chr23:25626008-25626576 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 480, 496

Conread position: 92-689
Cow position: chr23:25698677-25698080 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 370
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 61, 65

Conread position: 113-697
Cow position: chr23:24547330-24546746 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 485

Conread position: 114-697
Cow position: chr23:24522814-24522236 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 23

Conread position: 128-674
Cow position: chr23:24536030-24535484 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 164

Conread position: 128-696
Cow position: chr23:24639231-24639799 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 129-487
Cow position: chr23:25724111-25723753 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 232
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 278, 291

Conread position: 166-635
Cow position: chr23:24626277-24626744 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 17

Conread position: 175-697
Cow position: chr23:25660129-25660651 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 5

Conread position: 191-697
Cow position: chr23:24639212-24639716 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 315
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 171, 14

Conread position: 196-696
Cow position: chr23:25698657-25698157 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 319
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 41, 49

Conread position: 207-529
Cow position: chr23:24654043-24654365 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 213-611
Cow position: chr23:25724111-25723713 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 300

Conread position: 250-699
Cow position: chr23:24626277-24626726 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 17

Conread position: 257-697
Cow position: chr23:24639192-24639632 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 273
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 397, 408

Conread position: 265-658
Cow position: chr23:25724143-25723750 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 252
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 276-722
Cow position: chr23:24536050-24535602 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 283
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 422, 0

Conread position: 277-570
Cow position: chr23:24521982-24521689 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 186
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 130, 134

Conread position: 283-644
Cow position: chr23:24654037-24654396 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 230
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 297-697
Cow position: chr23:25698640-25698240 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 34

Conread position: 343-696
Cow position: chr23:25698678-25698325 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 219
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 62, 71

Conread position: 352-696
Cow position: chr23:24560903-24560559 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 218
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 359-697
Cow position: chr23:24536051-24535713 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 209
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 237, 218

Conread position: 375-697
Cow position: chr23:24654043-24654365 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 210
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 215, 207

Conread position: 418-697
Cow position: chr23:24560922-24560642 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 0

Conread position: 428-697
Cow position: chr23:25626009-25626278 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 85

Conread position: 433-697
Cow position: chr23:25724143-25723879 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 155, 165

Show alignments to all cow chromosomes.