Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-695 |
| Cow position: | chr28:9298289-9298978 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 16 |
| Conread position: | 1-697 |
| Cow position: | chr28:7757891-7758571 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 576, 399 |
| Conread position: | 6-697 |
| Cow position: | chr28:7757476-7758167 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 577 |
| Conread position: | 8-321 |
| Cow position: | chr28:33210290-33210604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 8-403 |
| Cow position: | chr28:9299283-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 83 |
| Conread position: | 8-405 |
| Cow position: | chr28:9253249-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 0 |
| Conread position: | 8-493 |
| Cow position: | chr28:34673417-34673902 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 8-641 |
| Cow position: | chr28:7810326-7810951 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 211 |
| Conread position: | 8-655 |
| Cow position: | chr28:9298712-9299342 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 106 |
| Conread position: | 8-696 |
| Cow position: | chr28:7757646-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-697 |
| Cow position: | chr28:7757562-7758251 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 578 |
| Conread position: | 8-698 |
| Cow position: | chr28:7756983-7757664 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 409 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 149, 29 |
| Conread position: | 9-453 |
| Cow position: | chr28:7758387-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 9-538 |
| Cow position: | chr28:9253082-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-572 |
| Cow position: | chr28:9290151-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 57 |
| Conread position: | 9-651 |
| Cow position: | chr28:11333822-11333180 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 382 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 301, 320 |
| Conread position: | 9-655 |
| Cow position: | chr28:9298880-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 114 |
| Conread position: | 9-658 |
| Cow position: | chr28:34695891-34696540 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 375 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 10-614 |
| Cow position: | chr28:11334073-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 362 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 420, 409 |
| Conread position: | 10-697 |
| Cow position: | chr28:9252584-9253266 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 154 |
| Conread position: | 11-697 |
| Cow position: | chr28:11334156-11333470 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 157 |
| Conread position: | 13-697 |
| Cow position: | chr28:7757399-7758083 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 561, 577 |
| Conread position: | 18-700 |
| Cow position: | chr28:7758160-7758825 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 559, 153 |
| Conread position: | 20-623 |
| Cow position: | chr28:9253009-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 557, 570 |
| Conread position: | 21-675 |
| Cow position: | chr28:9289992-9290643 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 216 |
| Conread position: | 28-751 |
| Cow position: | chr28:9298567-9299285 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 29-538 |
| Cow position: | chr28:7758323-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 224 |
| Conread position: | 41-405 |
| Cow position: | chr28:34673366-34673730 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 269, 277 |
| Conread position: | 41-696 |
| Cow position: | chr28:7757265-7757914 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 44-656 |
| Cow position: | chr28:11333955-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 267, 287 |
| Conread position: | 53-697 |
| Cow position: | chr28:7810287-7810922 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 250 |
| Conread position: | 66-610 |
| Cow position: | chr28:34679606-34679072 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 350 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 84-643 |
| Cow position: | chr28:9299194-9299745 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 351 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 90-697 |
| Cow position: | chr28:9252910-9253518 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 497 |
| Conread position: | 97-697 |
| Cow position: | chr28:7757237-7757831 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 92 |
| Conread position: | 97-697 |
| Cow position: | chr28:9289984-9290581 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 139 |
| Conread position: | 99-697 |
| Cow position: | chr28:9253004-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 499 |
| Conread position: | 112-657 |
| Cow position: | chr28:34673353-34673898 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 233, 226 |
| Conread position: | 113-623 |
| Cow position: | chr28:7758323-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 287 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 293, 298 |
| Conread position: | 113-697 |
| Cow position: | chr28:9289667-9290249 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 360 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 216 |
| Conread position: | 173-697 |
| Cow position: | chr28:9252580-9253098 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 233, 5 |
| Conread position: | 175-697 |
| Cow position: | chr28:9289817-9290331 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 128, 66 |
| Conread position: | 177-697 |
| Cow position: | chr28:11334242-11333722 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 316 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 194-573 |
| Cow position: | chr28:33210223-33210604 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 221 |
| Conread position: | 238-762 |
| Cow position: | chr28:34679602-34679077 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 261-698 |
| Cow position: | chr28:11334242-11333805 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 214, 208 |
| Conread position: | 262-655 |
| Cow position: | chr28:34695724-34696117 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 227, 259 |
| Conread position: | 282-683 |
| Cow position: | chr28:33210228-33210630 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 198, 211 |
| Conread position: | 283-659 |
| Cow position: | chr28:34673356-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 211, 223 |
| Conread position: | 301-697 |
| Cow position: | chr28:7810283-7810670 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 273, 251 |
| Conread position: | 362-697 |
| Cow position: | chr28:33210223-33210559 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 428-697 |
| Cow position: | chr28:7810251-7810511 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 146, 38 |
Show alignments to all cow chromosomes.