Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-319 |
| Cow position: | chr7:1439946-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-404 |
| Cow position: | chr7:18390385-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 378 |
| Conread position: | 1-506 |
| Cow position: | chr7:11600964-11600459 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 1-538 |
| Cow position: | chr7:3180340-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 176 |
| Conread position: | 1-655 |
| Cow position: | chr7:1014826-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 99 |
| Conread position: | 1-696 |
| Cow position: | chr7:18390049-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 103 |
| Conread position: | 1-697 |
| Cow position: | chr7:1014412-1015102 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 239 |
| Conread position: | 1-697 |
| Cow position: | chr7:8277651-8278347 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 155 |
| Conread position: | 1-722 |
| Cow position: | chr7:8277735-8278456 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 250 |
| Conread position: | 3-657 |
| Cow position: | chr7:8325464-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 14 |
| Conread position: | 6-493 |
| Cow position: | chr7:18390306-18390793 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 457, 469 |
| Conread position: | 7-292 |
| Cow position: | chr7:42878543-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 7-571 |
| Cow position: | chr7:8243531-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 507, 465 |
| Conread position: | 7-575 |
| Cow position: | chr7:8325550-8326118 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 66 |
| Conread position: | 7-655 |
| Cow position: | chr7:1439614-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 7-657 |
| Cow position: | chr7:8243280-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 7-694 |
| Cow position: | chr7:3180178-3180864 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 343 |
| Conread position: | 7-697 |
| Cow position: | chr7:3179926-3180616 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 239 |
| Conread position: | 7-697 |
| Cow position: | chr7:8325214-8325904 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 239 |
| Conread position: | 7-697 |
| Cow position: | chr7:11434909-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 65 |
| Conread position: | 8-254 |
| Cow position: | chr7:18390560-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 215, 203 |
| Conread position: | 8-403 |
| Cow position: | chr7:1438311-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 141, 159 |
| Conread position: | 8-467 |
| Cow position: | chr7:1438227-1438686 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 213, 206 |
| Conread position: | 8-656 |
| Cow position: | chr7:3179759-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 576 |
| Conread position: | 8-656 |
| Cow position: | chr7:8277406-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 421 |
| Conread position: | 8-659 |
| Cow position: | chr7:1014335-1014980 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 316 |
| Conread position: | 8-659 |
| Cow position: | chr7:3179845-3180494 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 566, 9 |
| Conread position: | 8-659 |
| Cow position: | chr7:8242861-8243511 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 315 |
| Conread position: | 8-659 |
| Cow position: | chr7:8243448-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 233 |
| Conread position: | 8-693 |
| Cow position: | chr7:8243784-8244451 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 217 |
| Conread position: | 8-694 |
| Cow position: | chr7:42878962-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 240 |
| Conread position: | 8-697 |
| Cow position: | chr7:1439448-1440137 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 136 |
| Conread position: | 8-697 |
| Cow position: | chr7:8243197-8243885 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 183 |
| Conread position: | 8-697 |
| Cow position: | chr7:8324795-8325484 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 148 |
| Conread position: | 8-697 |
| Cow position: | chr7:8324879-8325568 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 8-697 |
| Cow position: | chr7:8325131-8325820 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 57 |
| Conread position: | 8-697 |
| Cow position: | chr7:8325383-8326072 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 8-697 |
| Cow position: | chr7:11601209-11600520 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 8-697 |
| Cow position: | chr7:42879046-42878357 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 324 |
| Conread position: | 8-697 |
| Cow position: | chr7:42879130-42878441 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 408 |
| Conread position: | 9-546 |
| Cow position: | chr7:11434753-11434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 70 |
| Conread position: | 9-572 |
| Cow position: | chr7:18390225-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-610 |
| Cow position: | chr7:11601040-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 243 |
| Conread position: | 9-659 |
| Cow position: | chr7:8243366-8244013 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 14 |
| Conread position: | 9-697 |
| Cow position: | chr7:1439533-1440221 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 55 |
| Conread position: | 9-697 |
| Cow position: | chr7:3180096-3180784 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 9-697 |
| Cow position: | chr7:8277323-8278011 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 154 |
| Conread position: | 9-697 |
| Cow position: | chr7:8324964-8325652 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 230 |
| Conread position: | 10-280 |
| Cow position: | chr7:11600701-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 235, 7 |
| Conread position: | 10-697 |
| Cow position: | chr7:42879296-42878609 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 580 |
| Conread position: | 13-658 |
| Cow position: | chr7:1014670-1015315 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 577, 569 |
| Conread position: | 13-658 |
| Cow position: | chr7:1014754-1015399 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 562, 577 |
| Conread position: | 14-697 |
| Cow position: | chr7:8277832-8278513 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 141 |
| Conread position: | 18-690 |
| Cow position: | chr7:11601115-11600443 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 220 |
| Conread position: | 18-697 |
| Cow position: | chr7:3180021-3180700 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 396 |
| Conread position: | 18-703 |
| Cow position: | chr7:42879204-42878517 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 563, 580 |
| Conread position: | 20-573 |
| Cow position: | chr7:8278174-8278718 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 20-697 |
| Cow position: | chr7:8278006-8278675 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 59 |
| Conread position: | 21-697 |
| Cow position: | chr7:8277503-8278179 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 135 |
| Conread position: | 29-657 |
| Cow position: | chr7:1014272-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 300 |
| Conread position: | 30-656 |
| Cow position: | chr7:18390162-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 601, 613 |
| Conread position: | 31-697 |
| Cow position: | chr7:18389995-18390661 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 383 |
| Conread position: | 32-697 |
| Cow position: | chr7:8324735-8325400 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 33-697 |
| Cow position: | chr7:42879442-42878777 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 566 |
| Conread position: | 44-660 |
| Cow position: | chr7:8242813-8243428 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 45-697 |
| Cow position: | chr7:3179712-3180364 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 453 |
| Conread position: | 58-697 |
| Cow position: | chr7:1439410-1440053 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 91-697 |
| Cow position: | chr7:11601210-11600604 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 149 |
| Conread position: | 97-697 |
| Cow position: | chr7:1014670-1015270 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 110-697 |
| Cow position: | chr7:8324729-8325316 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 114-697 |
| Cow position: | chr7:42879276-42878693 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 484 |
| Conread position: | 116-697 |
| Cow position: | chr7:1438085-1438664 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 339 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 468, 100 |
| Conread position: | 128-697 |
| Cow position: | chr7:3179711-3180280 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 462 |
| Conread position: | 135-674 |
| Cow position: | chr7:1438186-1438724 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 254, 247 |
| Conread position: | 193-697 |
| Cow position: | chr7:8277255-8277759 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 193-697 |
| Cow position: | chr7:8324728-8325232 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 197-717 |
| Cow position: | chr7:1014272-1014790 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 330 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 454, 389 |
| Conread position: | 258-697 |
| Cow position: | chr7:3179673-3180112 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 285 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 274-697 |
| Cow position: | chr7:18389986-18390409 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 324-655 |
| Cow position: | chr7:1014234-1014562 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 259, 17 |
| Conread position: | 344-699 |
| Cow position: | chr7:11601209-11600854 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 371-695 |
| Cow position: | chr7:8242804-8243128 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 408-658 |
| Cow position: | chr7:1014234-1014481 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 182, 20 |
Show alignments to all cow chromosomes.