Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-326 |
| Cow position: | chr8:45201661-45201987 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 0 |
| Conread position: | 1-398 |
| Cow position: | chr8:45201577-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 1-455 |
| Cow position: | chr8:55581297-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 322, 330 |
| Conread position: | 1-720 |
| Cow position: | chr8:48407071-48406347 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 353 |
| Conread position: | 3-566 |
| Cow position: | chr8:45201411-45201974 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-697 |
| Cow position: | chr8:46816522-46817216 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 342 |
| Conread position: | 7-716 |
| Cow position: | chr8:48407401-48406688 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 330 |
| Conread position: | 8-530 |
| Cow position: | chr8:55581220-55581742 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 333 |
| Conread position: | 8-615 |
| Cow position: | chr8:46816779-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 568, 581 |
| Conread position: | 8-655 |
| Cow position: | chr8:46816359-46817006 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 505 |
| Conread position: | 8-655 |
| Cow position: | chr8:46816695-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 169 |
| Conread position: | 8-657 |
| Cow position: | chr8:55581052-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 493 |
| Conread position: | 8-697 |
| Cow position: | chr8:45201080-45201769 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 8-697 |
| Cow position: | chr8:45201164-45201853 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 578 |
| Conread position: | 8-697 |
| Cow position: | chr8:45201248-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 578 |
| Conread position: | 8-697 |
| Cow position: | chr8:46816191-46816880 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 321 |
| Conread position: | 8-697 |
| Cow position: | chr8:46816443-46817132 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 536, 529 |
| Conread position: | 8-697 |
| Cow position: | chr8:48407568-48406879 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 483, 498 |
| Conread position: | 8-704 |
| Cow position: | chr8:48407484-48406788 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 323 |
| Conread position: | 9-619 |
| Cow position: | chr8:55581137-55581747 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 316 |
| Conread position: | 9-657 |
| Cow position: | chr8:46816276-46816924 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 459 |
| Conread position: | 9-659 |
| Cow position: | chr8:55580885-55581535 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 472 |
| Conread position: | 9-697 |
| Cow position: | chr8:45200913-45201601 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 238 |
| Conread position: | 9-697 |
| Cow position: | chr8:46816108-46816796 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 577 |
| Conread position: | 9-720 |
| Cow position: | chr8:45201333-45202052 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 710 |
| Conread position: | 13-694 |
| Cow position: | chr8:46815941-46816625 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 313 |
| Conread position: | 13-697 |
| Cow position: | chr8:45201001-45201685 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 18-704 |
| Cow position: | chr8:46816621-46817307 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 412 |
| Conread position: | 20-697 |
| Cow position: | chr8:46816035-46816712 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 448 |
| Conread position: | 20-697 |
| Cow position: | chr8:55580980-55581657 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 393 |
| Conread position: | 24-698 |
| Cow position: | chr8:55580816-55581490 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 29-659 |
| Cow position: | chr8:48407631-48407001 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 554, 561 |
| Conread position: | 44-648 |
| Cow position: | chr8:55580752-55581356 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 53-383 |
| Cow position: | chr8:6958057-6957728 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 268, 281 |
| Conread position: | 89-697 |
| Cow position: | chr8:46815846-46816460 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 329 |
| Conread position: | 113-723 |
| Cow position: | chr8:55580736-55581349 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 114-493 |
| Cow position: | chr8:48406706-48406327 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 193, 186 |
| Conread position: | 137-467 |
| Cow position: | chr8:6958057-6957728 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 268, 281 |
| Conread position: | 174-697 |
| Cow position: | chr8:48407570-48407047 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 424 |
| Conread position: | 197-697 |
| Cow position: | chr8:48407631-48407131 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 146 |
| Conread position: | 221-644 |
| Cow position: | chr8:6958057-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 271, 281 |
| Conread position: | 265-697 |
| Cow position: | chr8:48407647-48407215 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 305-635 |
| Cow position: | chr8:6958057-6957728 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 345-697 |
| Cow position: | chr8:45200829-45201181 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 232, 247 |
| Conread position: | 474-655 |
| Cow position: | chr8:6958056-6957875 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.