Cow genome map
| Conread name: | Ss1.1-Emb1-C0005211_J19.5 |
| Conread position: | 1-466 |
| Cow position: | chrX:25310113-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 6-577 |
| Cow position: | chrX:14181498-14180927 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 172, 150 |
| Conread position: | 7-697 |
| Cow position: | chrX:25325442-25324752 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 508 |
| Conread position: | 8-403 |
| Cow position: | chrX:12627667-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 85, 75 |
| Conread position: | 8-628 |
| Cow position: | chrX:25324853-25324233 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 460 |
| Conread position: | 8-633 |
| Cow position: | chrX:29045282-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 8-634 |
| Cow position: | chrX:25309952-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 244 |
| Conread position: | 8-657 |
| Cow position: | chrX:25325525-25324876 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 467 |
| Conread position: | 8-694 |
| Cow position: | chrX:25324937-25324251 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 584 |
| Conread position: | 8-697 |
| Cow position: | chrX:12627333-12628020 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 8-697 |
| Cow position: | chrX:25309702-25310389 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 32 |
| Conread position: | 8-697 |
| Cow position: | chrX:25325357-25324668 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 584 |
| Conread position: | 8-697 |
| Cow position: | chrX:29045681-29045013 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 571, 264 |
| Conread position: | 8-704 |
| Cow position: | chrX:25325021-25324325 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 422 |
| Conread position: | 8-704 |
| Cow position: | chrX:25325189-25324493 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 323 |
| Conread position: | 9-559 |
| Cow position: | chrX:25310037-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 9-657 |
| Cow position: | chrX:25325104-25324456 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 459 |
| Conread position: | 9-661 |
| Cow position: | chrX:25325776-25325124 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 466, 459 |
| Conread position: | 9-697 |
| Cow position: | chrX:25309869-25310557 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 245 |
| Conread position: | 9-697 |
| Cow position: | chrX:25325272-25324584 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 318 |
| Conread position: | 10-571 |
| Cow position: | chrX:12627502-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 146 |
| Conread position: | 18-656 |
| Cow position: | chrX:13826876-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 372 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 60 |
| Conread position: | 18-721 |
| Cow position: | chrX:29045755-29045069 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 561, 346 |
| Conread position: | 19-697 |
| Cow position: | chrX:25325598-25324920 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 449 |
| Conread position: | 20-655 |
| Cow position: | chrX:12627429-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 62 |
| Conread position: | 20-658 |
| Cow position: | chrX:29045837-29045220 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 50 |
| Conread position: | 54-658 |
| Cow position: | chrX:12627295-12627897 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 66-697 |
| Cow position: | chrX:25325887-25325256 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 90-697 |
| Cow position: | chrX:29045284-29044677 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 495 |
| Conread position: | 92-698 |
| Cow position: | chrX:25309700-25310306 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 237 |
| Conread position: | 93-478 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 312, 322 |
| Conread position: | 96-565 |
| Cow position: | chrX:29045845-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 99-659 |
| Cow position: | chrX:29045356-29044799 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 499, 24 |
| Conread position: | 178-697 |
| Cow position: | chrX:29045361-29044845 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 258-696 |
| Cow position: | chrX:29045851-29045413 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 282-697 |
| Cow position: | chrX:12627271-12627684 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 139, 123 |
| Conread position: | 343-697 |
| Cow position: | chrX:25309699-25310053 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 235, 247 |
| Conread position: | 347-697 |
| Cow position: | chrX:29045846-29045496 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 64 |
Show alignments to all cow chromosomes.