Cow genome map

Conread name: Ss1.1-Emb1-C0005215_F19.5

Conread position: 36-148
Cow position: chr25:11375521-11375408 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 36-152
Cow position: chr25:17468869-17468752 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 122-397
Cow position: chr25:19923427-19923143 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 166
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 163, 0

Conread position: 142-366
Cow position: chr25:18209111-18209332 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 151, 9

Conread position: 147-366
Cow position: chr25:18423303-18423086 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 165, 87

Conread position: 148-363
Cow position: chr25:11665256-11665041 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 73, 62

Conread position: 148-366
Cow position: chr25:11929958-11930184 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 123, 0

Conread position: 149-304
Cow position: chr25:392858-392701 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 144, 0

Conread position: 149-361
Cow position: chr25:27534121-27534333 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 143, 128

Conread position: 149-362
Cow position: chr25:18886884-18887099 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 144, 0

Conread position: 149-363
Cow position: chr25:40390127-40390338 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 165, 73

Conread position: 149-366
Cow position: chr25:11043206-11042987 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 144, 0

Conread position: 149-366
Cow position: chr25:32578074-32578293 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 161
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 144, 0

Conread position: 149-366
Cow position: chr25:34344121-34344340 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 144, 0

Conread position: 149-398
Cow position: chr25:36634310-36634548 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 148, 52

Conread position: 151-366
Cow position: chr25:15366716-15366513 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 142, 104

Conread position: 152-365
Cow position: chr25:38634942-38634727 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 16

Conread position: 152-366
Cow position: chr25:14962363-14962571 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 141, 33

Conread position: 152-366
Cow position: chr25:35626639-35626845 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 141, 46

Conread position: 152-366
Cow position: chr25:37648020-37647800 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 152-367
Cow position: chr25:33837961-33837744 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 160
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 134, 0

Conread position: 153-271
Cow position: chr25:24638309-24638426 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 32

Conread position: 153-309
Cow position: chr25:25109447-25109604 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 129
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 140, 0

Conread position: 153-312
Cow position: chr25:33990666-33990826 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 140, 0

Conread position: 153-313
Cow position: chr25:13785721-13785560 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 140, 0

Conread position: 153-313
Cow position: chr25:18128817-18128660 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 54

Conread position: 153-314
Cow position: chr25:9646388-9646229 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 140, 124

Conread position: 153-334
Cow position: chr25:28261790-28261606 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 153-338
Cow position: chr25:34503650-34503837 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 0

Conread position: 153-352
Cow position: chr25:29803169-29803370 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 145, 0

Conread position: 153-360
Cow position: chr25:27019658-27019867 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 0

Conread position: 153-361
Cow position: chr25:35568305-35568512 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 62

Conread position: 153-362
Cow position: chr25:12939628-12939839 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 140, 193

Conread position: 153-362
Cow position: chr25:22150655-22150444 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 140, 0

Conread position: 153-362
Cow position: chr25:26281604-26281392 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 29, 0

Conread position: 153-362
Cow position: chr25:35755664-35755873 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 124

Conread position: 153-363
Cow position: chr25:30810384-30810181 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 140, 78

Conread position: 153-363
Cow position: chr25:33092484-33092692 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 76

Conread position: 153-366
Cow position: chr25:450186-450399 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 172
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 20, 79

Conread position: 153-366
Cow position: chr25:9076953-9076735 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 85, 166

Conread position: 153-366
Cow position: chr25:9395006-9394793 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 173

Conread position: 153-366
Cow position: chr25:12083253-12083468 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr25:13959650-13959436 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 138, 120

Conread position: 153-366
Cow position: chr25:16923557-16923769 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 127

Conread position: 153-366
Cow position: chr25:17586441-17586653 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 88

Conread position: 153-366
Cow position: chr25:18071055-18070839 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 140, 14

Conread position: 153-366
Cow position: chr25:19337738-19337956 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr25:20772751-20772966 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr25:24655857-24656067 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 54

Conread position: 153-366
Cow position: chr25:25481028-25481240 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 144, 104

Conread position: 153-366
Cow position: chr25:26355738-26355525 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 151
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 140, 88

Conread position: 153-366
Cow position: chr25:33262028-33261825 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 138, 49

Conread position: 153-366
Cow position: chr25:34667155-34667367 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 159, 143

Conread position: 153-367
Cow position: chr25:33688640-33688856 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 140, 0

Conread position: 153-397
Cow position: chr25:22519719-22519464 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 98, 84

Conread position: 153-397
Cow position: chr25:29313728-29313977 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 140, 0

Conread position: 153-398
Cow position: chr25:24449654-24449905 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 42

Conread position: 153-402
Cow position: chr25:18179603-18179360 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 159, 78

Conread position: 154-295
Cow position: chr25:20633345-20633204 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 154-303
Cow position: chr25:18489630-18489481 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 139, 67

Conread position: 154-362
Cow position: chr25:28862449-28862239 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 139, 0

Conread position: 154-363
Cow position: chr25:19107059-19106855 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 70

Conread position: 154-363
Cow position: chr25:36814131-36814343 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 154-366
Cow position: chr25:27814064-27813854 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 157

Conread position: 154-366
Cow position: chr25:33027669-33027882 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 124, 131

Conread position: 154-397
Cow position: chr25:23360762-23360517 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 135, 74

Conread position: 155-397
Cow position: chr25:39387213-39386966 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 138, 0

Conread position: 165-331
Cow position: chr25:11827964-11828132 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 0

Conread position: 165-338
Cow position: chr25:24007475-24007301 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 128, 168

Conread position: 165-353
Cow position: chr25:29526294-29526484 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 128, 0

Conread position: 165-365
Cow position: chr25:10136262-10136063 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 112

Conread position: 165-365
Cow position: chr25:37468067-37467873 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 150, 112

Conread position: 165-366
Cow position: chr25:14537093-14537296 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 165-366
Cow position: chr25:18268386-18268588 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 128, 137

Conread position: 165-378
Cow position: chr25:34675865-34675654 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 121, 168

Conread position: 165-387
Cow position: chr25:35571245-35571471 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 163
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 167-397
Cow position: chr25:15283801-15283567 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 132, 74

Conread position: 168-367
Cow position: chr25:18280009-18280203 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 48

Conread position: 168-367
Cow position: chr25:34494586-34494782 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 125, 78

Conread position: 169-313
Cow position: chr25:18264789-18264644 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 123, 0

Conread position: 170-292
Cow position: chr25:26538729-26538610 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 50

Conread position: 170-366
Cow position: chr25:19016835-19017025 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 123, 64

Conread position: 170-366
Cow position: chr25:35085731-35085932 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 115

Conread position: 170-367
Cow position: chr25:21546759-21546564 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 145, 31

Conread position: 170-367
Cow position: chr25:41408178-41407977 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 150

Conread position: 171-312
Cow position: chr25:34509901-34510044 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 172-366
Cow position: chr25:35648417-35648614 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 174-366
Cow position: chr25:14625893-14626075 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 119, 80

Conread position: 178-366
Cow position: chr25:35553246-35553056 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 182-366
Cow position: chr25:35561965-35562148 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 32

Conread position: 183-366
Cow position: chr25:10634715-10634900 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 189-348
Cow position: chr25:3374078-3374239 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 104, 0

Conread position: 189-366
Cow position: chr25:17657189-17657011 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 104, 156

Conread position: 190-366
Cow position: chr25:12835019-12835201 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 190-366
Cow position: chr25:26901075-26900902 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 8

Show alignments to all cow chromosomes.