Cow genome map
| Conread name: | Ss1.1-Emb1-C0005215_F19.5 |
| Conread position: | 32-152 |
| Cow position: | chr26:3691649-3691771 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 146-366 |
| Cow position: | chr26:8884690-8884469 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 151, 123 |
| Conread position: | 148-366 |
| Cow position: | chr26:2605092-2605308 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 149, 129 |
| Conread position: | 149-366 |
| Cow position: | chr26:1883986-1884210 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 190 |
| Conread position: | 150-362 |
| Cow position: | chr26:19348656-19348870 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 151-341 |
| Cow position: | chr26:8877790-8877980 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 139, 44 |
| Conread position: | 151-362 |
| Cow position: | chr26:17326999-17326790 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 142, 174 |
| Conread position: | 152-313 |
| Cow position: | chr26:12668288-12668125 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 152-366 |
| Cow position: | chr26:8872682-8872467 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 145, 121 |
| Conread position: | 152-366 |
| Cow position: | chr26:14365394-14365610 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 152-366 |
| Cow position: | chr26:30625773-30625980 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-418 |
| Cow position: | chr26:10459892-10459617 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 153-277 |
| Cow position: | chr26:34824081-34824206 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 153-308 |
| Cow position: | chr26:35423335-35423179 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-309 |
| Cow position: | chr26:31139438-31139596 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 153-313 |
| Cow position: | chr26:4752886-4752727 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 153-313 |
| Cow position: | chr26:9559042-9559203 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 153-313 |
| Cow position: | chr26:18781704-18781865 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-313 |
| Cow position: | chr26:18804528-18804689 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-328 |
| Cow position: | chr26:1347147-1347322 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 159, 132 |
| Conread position: | 153-338 |
| Cow position: | chr26:4729488-4729675 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 153-339 |
| Cow position: | chr26:13771871-13772062 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 153-346 |
| Cow position: | chr26:27987759-27987954 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-361 |
| Cow position: | chr26:3699807-3699601 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 140, 81 |
| Conread position: | 153-362 |
| Cow position: | chr26:6844678-6844888 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 153-362 |
| Cow position: | chr26:17394056-17394267 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 140, 193 |
| Conread position: | 153-362 |
| Cow position: | chr26:30586511-30586721 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 78 |
| Conread position: | 153-363 |
| Cow position: | chr26:14488418-14488630 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 140, 171 |
| Conread position: | 153-363 |
| Cow position: | chr26:32534601-32534392 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 159, 129 |
| Conread position: | 153-366 |
| Cow position: | chr26:367467-367253 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 144, 115 |
| Conread position: | 153-366 |
| Cow position: | chr26:1088027-1087812 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:1389819-1389609 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 153-366 |
| Cow position: | chr26:2201369-2201153 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:3906087-3905876 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 159, 124 |
| Conread position: | 153-366 |
| Cow position: | chr26:4441257-4441042 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:4601357-4601568 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 96, 14 |
| Conread position: | 153-366 |
| Cow position: | chr26:6793245-6793028 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:8087905-8087692 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 139, 157 |
| Conread position: | 153-366 |
| Cow position: | chr26:9114872-9114656 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:9483902-9483701 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 140, 99 |
| Conread position: | 153-366 |
| Cow position: | chr26:9841570-9841785 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:12585703-12585916 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 153-366 |
| Cow position: | chr26:21011975-21011762 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 140, 59 |
| Conread position: | 153-366 |
| Cow position: | chr26:28707224-28707439 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:30785610-30785395 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-366 |
| Cow position: | chr26:34264799-34264585 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 138, 99 |
| Conread position: | 153-366 |
| Cow position: | chr26:35562046-35561826 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 153-367 |
| Cow position: | chr26:3705480-3705265 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 119 |
| Conread position: | 153-393 |
| Cow position: | chr26:26306438-26306682 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 153-397 |
| Cow position: | chr26:6425834-6425580 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 153-398 |
| Cow position: | chr26:35394232-35394482 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 153-418 |
| Cow position: | chr26:8654490-8654751 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 140, 124 |
| Conread position: | 154-313 |
| Cow position: | chr26:4548443-4548287 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 13 |
| Conread position: | 154-366 |
| Cow position: | chr26:23889246-23889032 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 155-305 |
| Cow position: | chr26:12552467-12552620 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 155-366 |
| Cow position: | chr26:2222667-2222877 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 57 |
| Conread position: | 155-366 |
| Cow position: | chr26:6320944-6320735 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 165-324 |
| Cow position: | chr26:34271894-34271735 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 151 |
| Conread position: | 165-352 |
| Cow position: | chr26:34014720-34014529 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 132, 105 |
| Conread position: | 165-363 |
| Cow position: | chr26:13807203-13807403 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-366 |
| Cow position: | chr26:2349348-2349551 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-366 |
| Cow position: | chr26:2417572-2417775 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-366 |
| Cow position: | chr26:4122491-4122288 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-366 |
| Cow position: | chr26:18856944-18856741 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-366 |
| Cow position: | chr26:35122419-35122622 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 165-389 |
| Cow position: | chr26:32196920-32196697 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 170 |
| Conread position: | 166-365 |
| Cow position: | chr26:3027795-3027996 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 166-366 |
| Cow position: | chr26:1638213-1638414 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 127, 89 |
| Conread position: | 166-366 |
| Cow position: | chr26:4325793-4325993 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 98 |
| Conread position: | 170-332 |
| Cow position: | chr26:9838645-9838803 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 170-362 |
| Cow position: | chr26:4777210-4777017 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 170-366 |
| Cow position: | chr26:6079339-6079543 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 171-366 |
| Cow position: | chr26:25189280-25189084 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 122, 67 |
| Conread position: | 172-366 |
| Cow position: | chr26:27138756-27138951 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 138, 173 |
| Conread position: | 181-351 |
| Cow position: | chr26:625065-625234 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 49 |
| Conread position: | 181-366 |
| Cow position: | chr26:19012745-19012555 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 191-339 |
| Cow position: | chr26:31793562-31793413 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 91 |
| Conread position: | 219-397 |
| Cow position: | chr26:17994622-17994794 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 57 |
Show alignments to all cow chromosomes.