Cow genome map

Conread name: Ss1.1-Emb1-C0005215_F19.5

Conread position: 146-397
Cow position: chr27:25059941-25059681 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 145, 95

Conread position: 148-360
Cow position: chr27:29953057-29952849 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 145, 162

Conread position: 148-363
Cow position: chr27:8726374-8726157 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 145, 0

Conread position: 149-299
Cow position: chr27:2348637-2348487 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 149-360
Cow position: chr27:27236142-27235929 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 204

Conread position: 149-361
Cow position: chr27:2380382-2380167 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 144, 0

Conread position: 149-362
Cow position: chr27:9990414-9990627 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 164, 148

Conread position: 149-366
Cow position: chr27:23318128-23318346 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 74, 67

Conread position: 149-366
Cow position: chr27:26552645-26552847 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 165, 59

Conread position: 149-366
Cow position: chr27:30584365-30584582 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 144, 161

Conread position: 149-367
Cow position: chr27:5991246-5991465 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 155

Conread position: 149-397
Cow position: chr27:17567894-17567649 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 174
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 60, 49

Conread position: 150-397
Cow position: chr27:27193564-27193815 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 180
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 143, 166

Conread position: 152-299
Cow position: chr27:865398-865251 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 39

Conread position: 152-307
Cow position: chr27:5925051-5924895 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 0

Conread position: 152-352
Cow position: chr27:25971832-25972033 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 158, 0

Conread position: 152-366
Cow position: chr27:3995105-3995320 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 160, 0

Conread position: 152-366
Cow position: chr27:26031280-26031493 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 155, 130

Conread position: 152-369
Cow position: chr27:2897125-2896908 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 141, 29

Conread position: 152-397
Cow position: chr27:166129-166377 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 153-275
Cow position: chr27:15874293-15874415 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 153-313
Cow position: chr27:26452635-26452796 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 140, 0

Conread position: 153-325
Cow position: chr27:15543805-15543631 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 140, 0

Conread position: 153-332
Cow position: chr27:5989521-5989700 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 141, 27

Conread position: 153-339
Cow position: chr27:10378977-10378789 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 0

Conread position: 153-352
Cow position: chr27:30750573-30750770 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 159, 124

Conread position: 153-361
Cow position: chr27:12749823-12749613 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 140, 0

Conread position: 153-362
Cow position: chr27:4982162-4981951 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 153-362
Cow position: chr27:9332537-9332326 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 140, 0

Conread position: 153-362
Cow position: chr27:13900684-13900476 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 140, 59

Conread position: 153-362
Cow position: chr27:15034302-15034513 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 140, 0

Conread position: 153-362
Cow position: chr27:15634542-15634753 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 144, 0

Conread position: 153-362
Cow position: chr27:19523922-19524133 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 140, 170

Conread position: 153-362
Cow position: chr27:20810204-20809993 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 140, 0

Conread position: 153-364
Cow position: chr27:13170369-13170156 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 159, 0

Conread position: 153-366
Cow position: chr27:1031632-1031417 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr27:1535974-1535760 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 159, 0

Conread position: 153-366
Cow position: chr27:3991796-3991589 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 157, 20

Conread position: 153-366
Cow position: chr27:5913731-5913517 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 140, 199

Conread position: 153-366
Cow position: chr27:5984241-5984455 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 140, 191

Conread position: 153-366
Cow position: chr27:8261445-8261235 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 138, 124

Conread position: 153-366
Cow position: chr27:11488802-11488591 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 140, 78

Conread position: 153-366
Cow position: chr27:12146853-12147068 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr27:14297006-14296801 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 159, 124

Conread position: 153-366
Cow position: chr27:15273283-15273498 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 139, 0

Conread position: 153-366
Cow position: chr27:16788667-16788871 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 140, 115

Conread position: 153-366
Cow position: chr27:20761472-20761261 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 144, 55

Conread position: 153-366
Cow position: chr27:21451233-21451018 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 42, 67

Conread position: 153-366
Cow position: chr27:22723148-22722933 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 140, 195

Conread position: 153-366
Cow position: chr27:25965166-25965372 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 66, 125

Conread position: 153-366
Cow position: chr27:26599719-26599503 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr27:26855853-26855638 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 96, 100

Conread position: 153-366
Cow position: chr27:27665791-27665581 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 140, 99

Conread position: 153-366
Cow position: chr27:28685912-28686122 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 140, 120

Conread position: 153-366
Cow position: chr27:28923803-28923582 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 117, 0

Conread position: 153-366
Cow position: chr27:29036580-29036795 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 140, 0

Conread position: 153-366
Cow position: chr27:29859265-29859053 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 140, 124

Conread position: 153-366
Cow position: chr27:31268019-31267810 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 140, 72

Conread position: 153-367
Cow position: chr27:8200597-8200381 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 140, 0

Conread position: 153-367
Cow position: chr27:26327851-26327636 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 171, 162

Conread position: 153-396
Cow position: chr27:9255344-9255592 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 104, 78

Conread position: 153-397
Cow position: chr27:3232741-3232985 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 140, 183

Conread position: 153-402
Cow position: chr27:6017432-6017183 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 27

Conread position: 154-313
Cow position: chr27:27291184-27291024 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 139, 0

Conread position: 154-337
Cow position: chr27:15405439-15405256 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 149
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 138, 80

Conread position: 154-338
Cow position: chr27:25801416-25801602 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 139, 0

Conread position: 154-358
Cow position: chr27:15374622-15374414 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 154-366
Cow position: chr27:25785825-25786035 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 77

Conread position: 154-366
Cow position: chr27:28294073-28294286 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 139, 89

Conread position: 155-366
Cow position: chr27:8591856-8591645 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 171

Conread position: 155-397
Cow position: chr27:21284408-21284659 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 192
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 30, 15

Conread position: 165-294
Cow position: chr27:22648128-22648257 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 165-313
Cow position: chr27:10578705-10578557 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 128, 67

Conread position: 165-353
Cow position: chr27:22742628-22742813 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 128, 153

Conread position: 165-366
Cow position: chr27:1520458-1520256 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 128, 74

Conread position: 165-366
Cow position: chr27:8960251-8960454 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 165-366
Cow position: chr27:13353075-13352872 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 106, 153

Conread position: 165-366
Cow position: chr27:16031619-16031822 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 128, 0

Conread position: 165-366
Cow position: chr27:17404084-17404287 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 149
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 128, 0

Conread position: 165-366
Cow position: chr27:18697119-18696916 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 165-366
Cow position: chr27:26621473-26621671 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 128, 63

Conread position: 171-359
Cow position: chr27:26657152-26657339 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 49

Conread position: 173-370
Cow position: chr27:10260131-10260330 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 120, 0

Conread position: 177-366
Cow position: chr27:28042687-28042878 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 116, 0

Conread position: 178-367
Cow position: chr27:24296476-24296667 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 181-366
Cow position: chr27:27278478-27278290 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 183-417
Cow position: chr27:1498811-1498576 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 103

Conread position: 216-363
Cow position: chr27:15858683-15858533 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.