Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 275-615 |
| Cow position: | chr10:753075-752720 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 148 |
| Conread position: | 298-805 |
| Cow position: | chr10:28720865-28721379 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 353 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 303-571 |
| Cow position: | chr10:54975951-54975674 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 303-840 |
| Cow position: | chr10:20124710-20125276 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 304-819 |
| Cow position: | chr10:4337801-4337258 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 350 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 308-599 |
| Cow position: | chr10:38866550-38866856 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 308-601 |
| Cow position: | chr10:53913881-53914185 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 308-756 |
| Cow position: | chr10:44004421-44003953 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 308-830 |
| Cow position: | chr10:27720230-27719702 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 308-840 |
| Cow position: | chr10:12937600-12938130 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 352 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 22 |
| Conread position: | 310-602 |
| Cow position: | chr10:56293464-56293758 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 310-837 |
| Cow position: | chr10:24099790-24099216 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 316-838 |
| Cow position: | chr10:61882032-61882581 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 361 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 319-822 |
| Cow position: | chr10:20935573-20935041 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 356 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 322-750 |
| Cow position: | chr10:41917572-41917136 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 322-797 |
| Cow position: | chr10:31669635-31670145 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 7 |
| Conread position: | 322-812 |
| Cow position: | chr10:20388448-20387925 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 323-838 |
| Cow position: | chr10:8518562-8518011 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 329-569 |
| Cow position: | chr10:7652146-7652411 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 332-835 |
| Cow position: | chr10:7931657-7931144 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 327 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 59 |
| Conread position: | 356-839 |
| Cow position: | chr10:5448401-5447876 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 350 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 410-577 |
| Cow position: | chr10:54960271-54960094 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 42, 152 |
| Conread position: | 469-840 |
| Cow position: | chr10:51724995-51724595 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 476-759 |
| Cow position: | chr10:52047960-52048258 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 476-794 |
| Cow position: | chr10:20871074-20871399 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 476-823 |
| Cow position: | chr10:8459771-8460126 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 476-838 |
| Cow position: | chr10:25013224-25012850 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 488-794 |
| Cow position: | chr10:22537585-22537903 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 151 |
| Conread position: | 489-797 |
| Cow position: | chr10:6012772-6012449 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 489-840 |
| Cow position: | chr10:14901866-14902233 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 107 |
| Conread position: | 490-837 |
| Cow position: | chr10:40739776-40739417 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 210 |
| Conread position: | 490-840 |
| Cow position: | chr10:56735974-56736325 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 195, 114 |
| Conread position: | 496-819 |
| Cow position: | chr10:43288807-43288474 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 105 |
| Conread position: | 496-835 |
| Cow position: | chr10:6348575-6348924 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 496-840 |
| Cow position: | chr10:53211094-53210736 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 38, 157 |
| Conread position: | 501-827 |
| Cow position: | chr10:30447533-30447186 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 534-840 |
| Cow position: | chr10:7500828-7501142 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 31 |
| Conread position: | 539-836 |
| Cow position: | chr10:28790919-28790623 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 641-836 |
| Cow position: | chr10:3327110-3327308 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 650-840 |
| Cow position: | chr10:28728010-28727818 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 170 |
| Conread position: | 697-835 |
| Cow position: | chr10:3812852-3812714 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.