Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 229-546 |
| Cow position: | chr11:37945296-37945631 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 54 |
| Conread position: | 250-780 |
| Cow position: | chr11:18437429-18436865 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 383 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 311 |
| Conread position: | 281-603 |
| Cow position: | chr11:46027413-46027753 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 295-602 |
| Cow position: | chr11:9576304-9575975 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 10, 43 |
| Conread position: | 304-602 |
| Cow position: | chr11:2951101-2950791 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 308-619 |
| Cow position: | chr11:82419189-82419525 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 308-840 |
| Cow position: | chr11:52247910-52248442 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 354 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 309-836 |
| Cow position: | chr11:66258517-66259075 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 322-812 |
| Cow position: | chr11:30164578-30165095 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 322 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 325-840 |
| Cow position: | chr11:31609196-31609729 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 327-602 |
| Cow position: | chr11:1626148-1625848 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 329-586 |
| Cow position: | chr11:3798461-3798191 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 89 |
| Conread position: | 329-836 |
| Cow position: | chr11:65682188-65682709 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 33, 253 |
| Conread position: | 330-838 |
| Cow position: | chr11:15942306-15941774 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 336 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 93 |
| Conread position: | 337-602 |
| Cow position: | chr11:44529083-44529367 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 339-568 |
| Cow position: | chr11:40488394-40488150 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 155 |
| Conread position: | 476-793 |
| Cow position: | chr11:23883533-23883856 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 105 |
| Conread position: | 476-794 |
| Cow position: | chr11:35541885-35541550 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 89 |
| Conread position: | 476-796 |
| Cow position: | chr11:44043417-44043753 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 164 |
| Conread position: | 476-821 |
| Cow position: | chr11:26121734-26121387 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 40 |
| Conread position: | 476-840 |
| Cow position: | chr11:25776890-25776507 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 60, 318 |
| Conread position: | 477-602 |
| Cow position: | chr11:6240279-6240148 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 485-822 |
| Cow position: | chr11:52134341-52134012 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 213, 31 |
| Conread position: | 486-822 |
| Cow position: | chr11:2309122-2309471 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 165 |
| Conread position: | 486-829 |
| Cow position: | chr11:54094782-54095128 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 549-840 |
| Cow position: | chr11:16069891-16069599 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 557-838 |
| Cow position: | chr11:37945811-37946088 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 603-840 |
| Cow position: | chr11:40500453-40500690 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 632-834 |
| Cow position: | chr11:4306557-4306763 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 54, 8 |
| Conread position: | 632-838 |
| Cow position: | chr11:46027813-46028019 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 647-836 |
| Cow position: | chr11:2752662-2752853 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 648-838 |
| Cow position: | chr11:40642946-40643139 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 649-839 |
| Cow position: | chr11:74193529-74193335 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 676-839 |
| Cow position: | chr11:40491869-40492037 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.