Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 191-479 |
| Cow position: | chr4:11870758-11870463 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 98 |
| Conread position: | 256-548 |
| Cow position: | chr4:50604133-50604431 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 7 |
| Conread position: | 295-838 |
| Cow position: | chr4:13145032-13145624 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 395 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 10, 165 |
| Conread position: | 306-814 |
| Cow position: | chr4:44595571-44596110 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 355 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 308-600 |
| Cow position: | chr4:11104686-11104374 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 308-836 |
| Cow position: | chr4:18117886-18117337 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 382 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 308-840 |
| Cow position: | chr4:44046542-44047112 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 380 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 142, 58 |
| Conread position: | 320-835 |
| Cow position: | chr4:6613153-6612605 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 359 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 54, 10 |
| Conread position: | 322-602 |
| Cow position: | chr4:10553271-10553565 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 322-794 |
| Cow position: | chr4:58291766-58292277 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 331-602 |
| Cow position: | chr4:11498800-11499085 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 332-736 |
| Cow position: | chr4:26399822-26400247 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 356-602 |
| Cow position: | chr4:43046066-43045804 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 406-838 |
| Cow position: | chr4:23889080-23888611 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 453-750 |
| Cow position: | chr4:51825061-51824755 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 193 |
| Conread position: | 454-838 |
| Cow position: | chr4:14193807-14194200 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 471-793 |
| Cow position: | chr4:65464837-65464508 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 476-840 |
| Cow position: | chr4:54191339-54191720 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 489-836 |
| Cow position: | chr4:18859805-18859442 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 23 |
| Conread position: | 494-836 |
| Cow position: | chr4:59553372-59553020 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 245 |
| Conread position: | 498-840 |
| Cow position: | chr4:11870270-11869928 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 8, 91 |
| Conread position: | 519-840 |
| Cow position: | chr4:47288070-47288401 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 540-839 |
| Cow position: | chr4:43819947-43819633 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 544-840 |
| Cow position: | chr4:43501791-43501485 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 178 |
| Conread position: | 605-840 |
| Cow position: | chr4:50809407-50809636 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 607-837 |
| Cow position: | chr4:65142611-65142376 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 30 |
| Conread position: | 616-819 |
| Cow position: | chr4:40576502-40576298 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 76, 24 |
| Conread position: | 646-840 |
| Cow position: | chr4:19227188-19227387 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 647-837 |
| Cow position: | chr4:16246578-16246387 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 160 |
| Conread position: | 683-840 |
| Cow position: | chr4:35316563-35316719 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 112 |
| Conread position: | 699-838 |
| Cow position: | chr4:67645838-67645701 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 115, 28 |
Show alignments to all cow chromosomes.