Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 310-838 |
| Cow position: | chr5:7639267-7639833 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 367 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 250 |
| Conread position: | 322-779 |
| Cow position: | chr5:41067140-41067631 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 322-821 |
| Cow position: | chr5:46779642-46780184 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 346 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 324-836 |
| Cow position: | chr5:62204618-62205143 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 329 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 76 |
| Conread position: | 329-840 |
| Cow position: | chr5:49070680-49070130 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 364 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 40, 349 |
| Conread position: | 339-603 |
| Cow position: | chr5:25023447-25023723 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 146 |
| Conread position: | 404-602 |
| Cow position: | chr5:44359113-44359319 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 406-819 |
| Cow position: | chr5:25638812-25638396 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 187 |
| Conread position: | 474-836 |
| Cow position: | chr5:5441327-5441701 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 476-794 |
| Cow position: | chr5:2395003-2394667 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 148 |
| Conread position: | 476-818 |
| Cow position: | chr5:26402518-26402175 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 476-839 |
| Cow position: | chr5:20017600-20017229 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 59, 109 |
| Conread position: | 488-840 |
| Cow position: | chr5:5393419-5393781 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 153 |
| Conread position: | 490-840 |
| Cow position: | chr5:45168456-45168087 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 337 |
| Conread position: | 496-840 |
| Cow position: | chr5:42918913-42918543 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 533-840 |
| Cow position: | chr5:26568210-26567908 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 167, 30 |
| Conread position: | 606-840 |
| Cow position: | chr5:72600889-72601123 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 613-840 |
| Cow position: | chr5:17888076-17887845 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 653-829 |
| Cow position: | chr5:60674994-60675175 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 673-836 |
| Cow position: | chr5:65275755-65275923 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 6, 163 |
| Conread position: | 697-839 |
| Cow position: | chr5:64389065-64389211 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 697-840 |
| Cow position: | chr5:6064127-6063980 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 697-840 |
| Cow position: | chr5:69626409-69626551 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.