Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 138-270 |
| Cow position: | chr7:27233476-27233612 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 305-564 |
| Cow position: | chr7:13646118-13646391 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 61 |
| Conread position: | 306-581 |
| Cow position: | chr7:14329466-14329184 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 69, 241 |
| Conread position: | 315-837 |
| Cow position: | chr7:42505391-42505941 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 316-838 |
| Cow position: | chr7:54184557-54184016 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 361 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 210 |
| Conread position: | 317-751 |
| Cow position: | chr7:4009168-4009612 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 74 |
| Conread position: | 321-812 |
| Cow position: | chr7:62360660-62361181 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 516 |
| Conread position: | 322-603 |
| Cow position: | chr7:17950001-17950283 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 322-812 |
| Cow position: | chr7:37519957-37519439 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 360-836 |
| Cow position: | chr7:1549148-1548653 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 342 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 416-836 |
| Cow position: | chr7:8605014-8605438 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 435-839 |
| Cow position: | chr7:1731733-1731322 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 310 |
| Conread position: | 463-838 |
| Cow position: | chr7:29505774-29505400 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 467-830 |
| Cow position: | chr7:250171-249813 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 68, 140 |
| Conread position: | 476-602 |
| Cow position: | chr7:21877185-21877054 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 476-804 |
| Cow position: | chr7:61602496-61602163 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 476-812 |
| Cow position: | chr7:22358169-22357833 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 476-823 |
| Cow position: | chr7:46749518-46749878 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 171 |
| Conread position: | 476-836 |
| Cow position: | chr7:51288034-51288391 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 477-819 |
| Cow position: | chr7:32276838-32277193 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 481-836 |
| Cow position: | chr7:62439340-62438977 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 486-812 |
| Cow position: | chr7:39020776-39020439 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 140 |
| Conread position: | 486-813 |
| Cow position: | chr7:29509289-29509629 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 49, 16 |
| Conread position: | 513-838 |
| Cow position: | chr7:57821309-57820976 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 534-818 |
| Cow position: | chr7:30715864-30715581 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 158, 71 |
| Conread position: | 544-840 |
| Cow position: | chr7:11907900-11908206 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 616-840 |
| Cow position: | chr7:28880006-28880233 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 647-839 |
| Cow position: | chr7:5114781-5114978 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 647-840 |
| Cow position: | chr7:41156332-41156530 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 654-840 |
| Cow position: | chr7:41339875-41339684 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 672-840 |
| Cow position: | chr7:15572252-15572419 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 92 |
Show alignments to all cow chromosomes.