Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 135-794 |
| Cow position: | chr9:56301555-56300880 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 648 |
| Conread position: | 251-836 |
| Cow position: | chr9:53632166-53632748 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 261-752 |
| Cow position: | chr9:49342869-49343382 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 16, 110 |
| Conread position: | 304-793 |
| Cow position: | chr9:18855958-18855437 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 306-602 |
| Cow position: | chr9:51760315-51760631 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 306-840 |
| Cow position: | chr9:23603309-23603876 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 78, 318 |
| Conread position: | 308-600 |
| Cow position: | chr9:5703748-5704047 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 308-763 |
| Cow position: | chr9:18718510-18718012 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 342 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 308-763 |
| Cow position: | chr9:29022983-29023467 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 309-838 |
| Cow position: | chr9:32293403-32293936 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 349 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 324-602 |
| Cow position: | chr9:50728023-50727731 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 20 |
| Conread position: | 326-602 |
| Cow position: | chr9:13117388-13117095 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 68 |
| Conread position: | 403-838 |
| Cow position: | chr9:23368016-23367568 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 158 |
| Conread position: | 406-840 |
| Cow position: | chr9:24406262-24406708 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 198 |
| Conread position: | 476-790 |
| Cow position: | chr9:22755555-22755227 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 176 |
| Conread position: | 476-794 |
| Cow position: | chr9:22803278-22802947 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 176 |
| Conread position: | 489-812 |
| Cow position: | chr9:37017639-37017300 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 46, 7 |
| Conread position: | 491-840 |
| Cow position: | chr9:31672455-31672102 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 64 |
| Conread position: | 492-838 |
| Cow position: | chr9:48260493-48260131 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 496-812 |
| Cow position: | chr9:34523965-34523636 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 115 |
| Conread position: | 534-836 |
| Cow position: | chr9:35156493-35156199 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 243, 28 |
| Conread position: | 544-840 |
| Cow position: | chr9:33677169-33677467 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 62, 129 |
| Conread position: | 633-838 |
| Cow position: | chr9:59591059-59590855 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 674-840 |
| Cow position: | chr9:13115894-13115728 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 683-836 |
| Cow position: | chr9:9378021-9378169 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 698-836 |
| Cow position: | chr9:13025973-13025833 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.