Cow genome map
| Conread name: | Ss1.1-Emb1-C0005218_M21.5 |
| Conread position: | 288-838 |
| Cow position: | chrX:10998048-10998629 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 382 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 301-838 |
| Cow position: | chrX:6026616-6026046 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 29 |
| Conread position: | 304-481 |
| Cow position: | chrX:24129390-24129577 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 306-840 |
| Cow position: | chrX:17902408-17901842 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 346 |
| Conread position: | 308-602 |
| Cow position: | chrX:25738150-25738465 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 308-602 |
| Cow position: | chrX:37959716-37960018 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 308-761 |
| Cow position: | chrX:8421351-8421830 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 20 |
| Conread position: | 308-840 |
| Cow position: | chrX:25144190-25144742 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 319-840 |
| Cow position: | chrX:14268102-14267537 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 382 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 322-799 |
| Cow position: | chrX:22612505-22613014 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 327-589 |
| Cow position: | chrX:21729049-21728774 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 46 |
| Conread position: | 338-840 |
| Cow position: | chrX:18769037-18769564 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 312 |
| Conread position: | 341-838 |
| Cow position: | chrX:28819874-28820405 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 152 |
| Conread position: | 356-574 |
| Cow position: | chrX:36376724-36376958 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 378-837 |
| Cow position: | chrX:39410270-39409810 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 88 |
| Conread position: | 383-760 |
| Cow position: | chrX:24923025-24923438 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 404-812 |
| Cow position: | chrX:41879724-41879290 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 53, 257 |
| Conread position: | 404-840 |
| Cow position: | chrX:23832237-23831783 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 475-840 |
| Cow position: | chrX:12750273-12750639 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 488-838 |
| Cow position: | chrX:37943438-37943083 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 47, 97 |
| Conread position: | 490-840 |
| Cow position: | chrX:35832716-35833073 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 159 |
| Conread position: | 497-837 |
| Cow position: | chrX:1048197-1048562 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 25, 162 |
| Conread position: | 534-807 |
| Cow position: | chrX:35820921-35820638 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 534-840 |
| Cow position: | chrX:3628121-3628434 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 126 |
| Conread position: | 534-840 |
| Cow position: | chrX:23382837-23382509 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 605-831 |
| Cow position: | chrX:7418685-7418913 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 80, 32 |
| Conread position: | 605-840 |
| Cow position: | chrX:31982197-31981959 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 79, 21 |
| Conread position: | 639-836 |
| Cow position: | chrX:44428136-44427934 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 646-840 |
| Cow position: | chrX:9156785-9156984 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 123 |
| Conread position: | 647-840 |
| Cow position: | chrX:11509538-11509735 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 9 |
| Conread position: | 647-840 |
| Cow position: | chrX:18152786-18152589 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 163 |
| Conread position: | 649-840 |
| Cow position: | chrX:25039055-25039250 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 89 |
| Conread position: | 650-822 |
| Cow position: | chrX:24529118-24529290 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 50, 39 |
| Conread position: | 665-840 |
| Cow position: | chrX:27116210-27116040 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 668-840 |
| Cow position: | chrX:19599523-19599699 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 670-836 |
| Cow position: | chrX:9235152-9235319 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 688-838 |
| Cow position: | chrX:19170795-19170648 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 697-840 |
| Cow position: | chrX:1964236-1964379 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.