Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-307 |
| Cow position: | chr13:56317481-56317785 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 75, 63 |
| Conread position: | 1-401 |
| Cow position: | chr13:56292389-56291991 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 3-387 |
| Cow position: | chr13:39983874-39984258 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 333, 317 |
| Conread position: | 4-337 |
| Cow position: | chr13:24162714-24163047 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 109, 103 |
| Conread position: | 4-365 |
| Cow position: | chr13:56292139-56291778 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 351 |
| Conread position: | 5-356 |
| Cow position: | chr13:56333692-56334043 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 69, 62 |
| Conread position: | 6-273 |
| Cow position: | chr13:39984633-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 170, 149 |
| Conread position: | 6-307 |
| Cow position: | chr13:39930877-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 268, 0 |
| Conread position: | 6-318 |
| Cow position: | chr13:39984549-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 243, 237 |
| Conread position: | 6-326 |
| Cow position: | chr13:56292799-56292487 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 229, 24 |
| Conread position: | 6-356 |
| Cow position: | chr13:39983961-39984311 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 243, 233 |
| Conread position: | 6-358 |
| Cow position: | chr13:39930709-39931061 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-364 |
| Cow position: | chr13:39930793-39931151 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-387 |
| Cow position: | chr13:56333609-56333994 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 6-391 |
| Cow position: | chr13:39984297-39984686 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 238, 233 |
| Conread position: | 6-394 |
| Cow position: | chr13:39984465-39984857 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 338 |
| Conread position: | 6-400 |
| Cow position: | chr13:39984045-39984444 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 149 |
| Conread position: | 6-403 |
| Cow position: | chr13:39984129-39984531 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 6-413 |
| Cow position: | chr13:39984381-39984794 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 151 |
| Conread position: | 7-309 |
| Cow position: | chr13:22125243-22125545 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-322 |
| Cow position: | chr13:56333526-56333840 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 60 |
| Conread position: | 7-335 |
| Cow position: | chr13:24162969-24163298 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 323, 0 |
| Conread position: | 7-337 |
| Cow position: | chr13:22124991-22125321 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 106, 100 |
| Conread position: | 7-357 |
| Cow position: | chr13:24162465-24162815 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-368 |
| Cow position: | chr13:22124739-22125100 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-396 |
| Cow position: | chr13:56333778-56334180 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 151, 133 |
| Conread position: | 10-358 |
| Cow position: | chr13:39930629-39930977 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-420 |
| Cow position: | chr13:56333870-56334292 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 178, 229 |
| Conread position: | 16-402 |
| Cow position: | chr13:39984223-39984614 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 25-337 |
| Cow position: | chr13:22125345-22125657 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-289 |
| Cow position: | chr13:56334059-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 129, 115 |
| Conread position: | 30-391 |
| Cow position: | chr13:56292194-56291831 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 36 |
| Conread position: | 41-307 |
| Cow position: | chr13:56292848-56292587 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.