Cow genome map

Conread name: Ss1.1-End4-UMC-pd12_14end-006-a08.3

Conread position: 1-311
Cow position: chr17:22499084-22498774 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 161, 141

Conread position: 1-391
Cow position: chr17:22589623-22589229 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 318

Conread position: 1-394
Cow position: chr17:22552205-22551808 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 0

Conread position: 2-311
Cow position: chr17:22452321-22452012 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 225

Conread position: 3-356
Cow position: chr17:22551867-22551514 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-364
Cow position: chr17:22589537-22589176 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 148

Conread position: 3-409
Cow position: chr17:22553043-22552630 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 3-422
Cow position: chr17:22552539-22552114 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 115

Conread position: 4-233
Cow position: chr17:22473732-22473962 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 192, 0

Conread position: 4-394
Cow position: chr17:22553126-22552732 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 328

Conread position: 5-394
Cow position: chr17:22590207-22589814 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 0

Conread position: 5-396
Cow position: chr17:22589955-22589560 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 146

Conread position: 5-399
Cow position: chr17:22499332-22498934 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 314

Conread position: 6-222
Cow position: chr17:22551696-22551480 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 6-295
Cow position: chr17:22498827-22498538 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 6-310
Cow position: chr17:22451981-22451677 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 212
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 159, 146

Conread position: 6-358
Cow position: chr17:22498911-22498559 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 233
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 116, 109

Conread position: 6-363
Cow position: chr17:22552368-22552009 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 335

Conread position: 6-364
Cow position: chr17:22552788-22552428 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 332

Conread position: 6-391
Cow position: chr17:22473398-22473787 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 145

Conread position: 6-396
Cow position: chr17:22499163-22498769 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 258
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 155, 145

Conread position: 6-396
Cow position: chr17:22552620-22552226 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 0

Conread position: 6-409
Cow position: chr17:22552116-22551706 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 0

Conread position: 6-416
Cow position: chr17:22552032-22551615 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 332

Conread position: 6-422
Cow position: chr17:22452401-22451979 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 136

Conread position: 7-230
Cow position: chr17:22451896-22451673 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 147
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 64

Conread position: 7-296
Cow position: chr17:22551779-22551490 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-388
Cow position: chr17:22452148-22451763 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 313

Conread position: 7-390
Cow position: chr17:22452064-22451677 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 324

Conread position: 7-394
Cow position: chr17:22452232-22451841 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 140

Conread position: 7-394
Cow position: chr17:22552451-22552060 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 85

Conread position: 7-394
Cow position: chr17:22552871-22552480 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 7-396
Cow position: chr17:22552703-22552310 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 331

Conread position: 7-403
Cow position: chr17:22552283-22551882 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 164

Conread position: 7-407
Cow position: chr17:22589701-22589294 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 147

Conread position: 7-416
Cow position: chr17:22551947-22551531 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 7-418
Cow position: chr17:22590289-22589871 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 7-434
Cow position: chr17:22589869-22589431 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 0

Conread position: 13-358
Cow position: chr17:22473573-22473918 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-391
Cow position: chr17:22473489-22473871 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 54

Conread position: 15-307
Cow position: chr17:22473659-22473952 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 265, 0

Conread position: 15-356
Cow position: chr17:22590029-22589688 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 25-356
Cow position: chr17:22498976-22498645 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 219
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 213, 221

Conread position: 28-394
Cow position: chr17:22499393-22499023 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 0

Conread position: 28-396
Cow position: chr17:22473336-22473708 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 207

Conread position: 38-385
Cow position: chr17:22473262-22473609 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 232
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 290, 270

Conread position: 47-422
Cow position: chr17:22553167-22552786 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 310, 370

Conread position: 83-416
Cow position: chr17:22590297-22589957 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 225
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 64

Conread position: 160-419
Cow position: chr17:22590304-22590038 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 155, 148

Show alignments to all cow chromosomes.