Cow genome map
Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
Conread position: | 1-311 |
Cow position: | chr17:22499084-22498774 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 208 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 161, 141 |
Conread position: | 1-391 |
Cow position: | chr17:22589623-22589229 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 322, 318 |
Conread position: | 1-394 |
Cow position: | chr17:22552205-22551808 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 356, 0 |
Conread position: | 2-311 |
Cow position: | chr17:22452321-22452012 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 225 |
Conread position: | 3-356 |
Cow position: | chr17:22551867-22551514 (view UCSC Genome Browser custom track) |
Alignm length: | 354 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 3-364 |
Cow position: | chr17:22589537-22589176 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 148 |
Conread position: | 3-409 |
Cow position: | chr17:22553043-22552630 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 354, 0 |
Conread position: | 3-422 |
Cow position: | chr17:22552539-22552114 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 115 |
Conread position: | 4-233 |
Cow position: | chr17:22473732-22473962 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 166 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 192, 0 |
Conread position: | 4-394 |
Cow position: | chr17:22553126-22552732 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 340, 328 |
Conread position: | 5-394 |
Cow position: | chr17:22590207-22589814 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 352, 0 |
Conread position: | 5-396 |
Cow position: | chr17:22589955-22589560 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 146 |
Conread position: | 5-399 |
Cow position: | chr17:22499332-22498934 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 320, 314 |
Conread position: | 6-222 |
Cow position: | chr17:22551696-22551480 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 153 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 6-295 |
Cow position: | chr17:22498827-22498538 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 199 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 6-310 |
Cow position: | chr17:22451981-22451677 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 212 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 159, 146 |
Conread position: | 6-358 |
Cow position: | chr17:22498911-22498559 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 233 |
Alignm E-value: | 8e-40 |
Alignm gaps (pig, cow): | 116, 109 |
Conread position: | 6-363 |
Cow position: | chr17:22552368-22552009 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 326, 335 |
Conread position: | 6-364 |
Cow position: | chr17:22552788-22552428 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 325, 332 |
Conread position: | 6-391 |
Cow position: | chr17:22473398-22473787 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 145 |
Conread position: | 6-396 |
Cow position: | chr17:22499163-22498769 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 258 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 155, 145 |
Conread position: | 6-396 |
Cow position: | chr17:22552620-22552226 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 351, 0 |
Conread position: | 6-409 |
Cow position: | chr17:22552116-22551706 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 351, 0 |
Conread position: | 6-416 |
Cow position: | chr17:22552032-22551615 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 338, 332 |
Conread position: | 6-422 |
Cow position: | chr17:22452401-22451979 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 136 |
Conread position: | 7-230 |
Cow position: | chr17:22451896-22451673 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 147 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 73, 64 |
Conread position: | 7-296 |
Cow position: | chr17:22551779-22551490 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 7-388 |
Cow position: | chr17:22452148-22451763 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 325, 313 |
Conread position: | 7-390 |
Cow position: | chr17:22452064-22451677 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 336, 324 |
Conread position: | 7-394 |
Cow position: | chr17:22452232-22451841 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 140 |
Conread position: | 7-394 |
Cow position: | chr17:22552451-22552060 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 85 |
Conread position: | 7-394 |
Cow position: | chr17:22552871-22552480 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 350, 0 |
Conread position: | 7-396 |
Cow position: | chr17:22552703-22552310 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 337, 331 |
Conread position: | 7-403 |
Cow position: | chr17:22552283-22551882 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 164 |
Conread position: | 7-407 |
Cow position: | chr17:22589701-22589294 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 147 |
Conread position: | 7-416 |
Cow position: | chr17:22551947-22551531 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 350, 0 |
Conread position: | 7-418 |
Cow position: | chr17:22590289-22589871 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 350, 0 |
Conread position: | 7-434 |
Cow position: | chr17:22589869-22589431 (view UCSC Genome Browser custom track) |
Alignm length: | 439 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 331, 0 |
Conread position: | 13-358 |
Cow position: | chr17:22473573-22473918 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 13-391 |
Cow position: | chr17:22473489-22473871 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 54 |
Conread position: | 15-307 |
Cow position: | chr17:22473659-22473952 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 200 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 265, 0 |
Conread position: | 15-356 |
Cow position: | chr17:22590029-22589688 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 228 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 25-356 |
Cow position: | chr17:22498976-22498645 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 219 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 213, 221 |
Conread position: | 28-394 |
Cow position: | chr17:22499393-22499023 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 331, 0 |
Conread position: | 28-396 |
Cow position: | chr17:22473336-22473708 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 217, 207 |
Conread position: | 38-385 |
Cow position: | chr17:22473262-22473609 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 232 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 290, 270 |
Conread position: | 47-422 |
Cow position: | chr17:22553167-22552786 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 249 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 310, 370 |
Conread position: | 83-416 |
Cow position: | chr17:22590297-22589957 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 225 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 75, 64 |
Conread position: | 160-419 |
Cow position: | chr17:22590304-22590038 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 180 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 155, 148 |
Show alignments to all cow chromosomes.