Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-201 |
| Cow position: | chr19:23614920-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 157, 150 |
| Conread position: | 1-392 |
| Cow position: | chr19:14939965-14940359 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 9 |
| Conread position: | 1-393 |
| Cow position: | chr19:23597341-23597736 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 388 |
| Conread position: | 1-394 |
| Cow position: | chr19:20677927-20678324 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 369, 0 |
| Conread position: | 1-394 |
| Cow position: | chr19:23614332-23614729 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 66 |
| Conread position: | 1-394 |
| Cow position: | chr19:23649614-23650011 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 1-394 |
| Cow position: | chr19:43570322-43569935 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 329, 44 |
| Conread position: | 1-400 |
| Cow position: | chr19:23649530-23649934 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 251 |
| Conread position: | 1-408 |
| Cow position: | chr19:23614584-23614994 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 1-416 |
| Cow position: | chr19:14960415-14959995 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 262 |
| Conread position: | 3-234 |
| Cow position: | chr19:14959995-14959766 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 3-311 |
| Cow position: | chr19:14948405-14948097 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-318 |
| Cow position: | chr19:14940722-14941037 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-368 |
| Cow position: | chr19:14940470-14940835 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-368 |
| Cow position: | chr19:14960245-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-396 |
| Cow position: | chr19:23597259-23597657 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-399 |
| Cow position: | chr19:20678097-20678497 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 3-408 |
| Cow position: | chr19:23614250-23614658 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 4-368 |
| Cow position: | chr19:23597092-23597456 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 241, 231 |
| Conread position: | 4-394 |
| Cow position: | chr19:20677846-20678240 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 260 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 178, 174 |
| Conread position: | 5-311 |
| Cow position: | chr19:23614504-23614810 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-391 |
| Cow position: | chr19:20678351-20678738 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 336 |
| Conread position: | 5-394 |
| Cow position: | chr19:14940304-14940697 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 0 |
| Conread position: | 5-394 |
| Cow position: | chr19:23613832-23614225 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 333 |
| Conread position: | 5-418 |
| Cow position: | chr19:23614168-23614588 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 315 |
| Conread position: | 6-305 |
| Cow position: | chr19:14916112-14916406 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 185, 25 |
| Conread position: | 6-311 |
| Cow position: | chr19:14916028-14916329 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 113, 93 |
| Conread position: | 6-318 |
| Cow position: | chr19:20635400-20635088 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 6-358 |
| Cow position: | chr19:14959177-14958831 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 6-358 |
| Cow position: | chr19:23614085-23614437 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 313 |
| Conread position: | 6-368 |
| Cow position: | chr19:14940641-14941003 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-368 |
| Cow position: | chr19:23596929-23597288 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 254, 104 |
| Conread position: | 6-368 |
| Cow position: | chr19:23614757-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 64 |
| Conread position: | 6-368 |
| Cow position: | chr19:43570159-43569797 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 6-382 |
| Cow position: | chr19:14959670-14959296 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-392 |
| Cow position: | chr19:23649367-23649757 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 6-394 |
| Cow position: | chr19:20677764-20678156 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 6-394 |
| Cow position: | chr19:23614421-23614813 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 0 |
| Conread position: | 6-394 |
| Cow position: | chr19:23649871-23650263 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 305, 332 |
| Conread position: | 6-397 |
| Cow position: | chr19:23649451-23649847 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 338 |
| Conread position: | 6-398 |
| Cow position: | chr19:20677680-20678077 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 6-398 |
| Cow position: | chr19:43570075-43569683 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 6-403 |
| Cow position: | chr19:23613749-23614150 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 158 |
| Conread position: | 6-430 |
| Cow position: | chr19:23613413-23613846 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 218 |
| Conread position: | 7-168 |
| Cow position: | chr19:14940894-14941055 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-232 |
| Cow position: | chr19:14948233-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-251 |
| Cow position: | chr19:14940810-14941054 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-311 |
| Cow position: | chr19:14948317-14948013 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-312 |
| Cow position: | chr19:20635483-20635178 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 238, 231 |
| Conread position: | 7-352 |
| Cow position: | chr19:23649704-23650049 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-358 |
| Cow position: | chr19:23650124-23650475 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-368 |
| Cow position: | chr19:23650040-23650401 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 152, 158 |
| Conread position: | 7-377 |
| Cow position: | chr19:14960075-14959706 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 142 |
| Conread position: | 7-379 |
| Cow position: | chr19:23649956-23650332 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 242 |
| Conread position: | 7-392 |
| Cow position: | chr19:14940558-14940947 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 7-394 |
| Cow position: | chr19:14948484-14948094 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 363, 80 |
| Conread position: | 7-394 |
| Cow position: | chr19:23614674-23615065 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 7-394 |
| Cow position: | chr19:23649788-23650179 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 320, 331 |
| Conread position: | 7-396 |
| Cow position: | chr19:14940222-14940615 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 7-403 |
| Cow position: | chr19:23613918-23614317 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 395 |
| Conread position: | 7-403 |
| Cow position: | chr19:43570242-43569841 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 7-405 |
| Cow position: | chr19:23613582-23613983 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 395 |
| Conread position: | 7-419 |
| Cow position: | chr19:14940390-14940809 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 332 |
| Conread position: | 10-409 |
| Cow position: | chr19:14959257-14958861 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 350, 136 |
| Conread position: | 13-391 |
| Cow position: | chr19:14960153-14959773 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 0 |
| Conread position: | 13-391 |
| Cow position: | chr19:20635645-20635263 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 13-394 |
| Cow position: | chr19:14940060-14940445 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 13-394 |
| Cow position: | chr19:20678275-20678660 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 165 |
| Conread position: | 13-394 |
| Cow position: | chr19:23614008-23614393 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 59 |
| Conread position: | 13-396 |
| Cow position: | chr19:14940144-14940532 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 13-396 |
| Cow position: | chr19:20678191-20678578 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 102 |
| Conread position: | 15-286 |
| Cow position: | chr19:14959579-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 240, 222 |
| Conread position: | 16-356 |
| Cow position: | chr19:23597188-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-394 |
| Cow position: | chr19:20677606-20677988 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 18-302 |
| Cow position: | chr19:20635304-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 60 |
| Conread position: | 23-394 |
| Cow position: | chr19:14960477-14960104 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 348, 324 |
| Conread position: | 25-368 |
| Cow position: | chr19:23649302-23649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-396 |
| Cow position: | chr19:23613350-23613723 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 281 |
| Conread position: | 27-402 |
| Cow position: | chr19:20677533-20677913 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 135, 124 |
| Conread position: | 35-394 |
| Cow position: | chr19:20677373-20677736 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 41-312 |
| Cow position: | chr19:20635701-20635430 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-421 |
| Cow position: | chr19:14959306-14958928 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 54-407 |
| Cow position: | chr19:14939933-14940293 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 74, 61 |
| Conread position: | 96-397 |
| Cow position: | chr19:23649289-23649595 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 259, 0 |
Show alignments to all cow chromosomes.