Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 3-352 |
| Cow position: | chr2:78755646-78755993 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 162, 19 |
| Conread position: | 3-416 |
| Cow position: | chr2:78754572-78754976 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 88, 64 |
| Conread position: | 3-418 |
| Cow position: | chr2:78754976-78755397 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 327 |
| Conread position: | 3-418 |
| Cow position: | chr2:78755896-78756317 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 4-311 |
| Cow position: | chr2:86465327-86465634 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 4-422 |
| Cow position: | chr2:78754407-78754827 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 78, 35 |
| Conread position: | 5-311 |
| Cow position: | chr2:78756067-78756370 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 5-378 |
| Cow position: | chr2:78755397-78755767 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 5-418 |
| Cow position: | chr2:78755564-78755982 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 236, 103 |
| Conread position: | 5-422 |
| Cow position: | chr2:78754894-78755317 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 6-267 |
| Cow position: | chr2:82800177-82800438 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-308 |
| Cow position: | chr2:5874447-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 135, 148 |
| Conread position: | 6-318 |
| Cow position: | chr2:48689478-48689167 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 6-365 |
| Cow position: | chr2:5875119-5874756 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 309, 302 |
| Conread position: | 6-368 |
| Cow position: | chr2:82799925-82800287 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 116, 109 |
| Conread position: | 6-392 |
| Cow position: | chr2:82799589-82799979 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 6-394 |
| Cow position: | chr2:78754811-78755203 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 302 |
| Conread position: | 6-418 |
| Cow position: | chr2:78755315-78755730 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 22 |
| Conread position: | 7-358 |
| Cow position: | chr2:5874866-5874515 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 220, 242 |
| Conread position: | 7-363 |
| Cow position: | chr2:82800010-82800368 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 7-368 |
| Cow position: | chr2:82799842-82800203 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-392 |
| Cow position: | chr2:82799674-82800063 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 7-402 |
| Cow position: | chr2:82799506-82799906 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 7-416 |
| Cow position: | chr2:82800094-82800503 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 140 |
| Conread position: | 9-396 |
| Cow position: | chr2:78755734-78756125 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 63, 83 |
| Conread position: | 13-311 |
| Cow position: | chr2:86465504-86465802 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 13-368 |
| Cow position: | chr2:86465924-86466278 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 13-414 |
| Cow position: | chr2:86465168-86465576 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 85 |
| Conread position: | 13-418 |
| Cow position: | chr2:78754332-78754738 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 142, 110 |
| Conread position: | 19-358 |
| Cow position: | chr2:86465762-86466101 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 163, 159 |
| Conread position: | 19-365 |
| Cow position: | chr2:5874686-5874338 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 62 |
| Conread position: | 25-396 |
| Cow position: | chr2:86465097-86465471 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 25-397 |
| Cow position: | chr2:82799776-82800153 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 29-368 |
| Cow position: | chr2:5875180-5874841 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 87 |
| Conread position: | 31-396 |
| Cow position: | chr2:78754101-78754465 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 42-322 |
| Cow position: | chr2:82799457-82799737 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 116-396 |
| Cow position: | chr2:5875178-5874892 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 127-392 |
| Cow position: | chr2:82799458-82799727 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 201, 186 |
Show alignments to all cow chromosomes.