Cow genome map

Conread name: Ss1.1-End4-UMC-pd12_14end-006-a08.3

Conread position: 1-358
Cow position: chr22:12399198-12398841 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-368
Cow position: chr22:12499600-12499967 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-391
Cow position: chr22:14429872-14430266 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 181, 177

Conread position: 1-394
Cow position: chr22:12458634-12458237 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 258
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 359, 0

Conread position: 1-396
Cow position: chr22:12385526-12385125 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 55

Conread position: 1-396
Cow position: chr22:12399618-12399219 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 144

Conread position: 1-410
Cow position: chr22:12499432-12499848 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 274
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 330, 337

Conread position: 1-416
Cow position: chr22:12458214-12457792 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 272
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 73

Conread position: 3-289
Cow position: chr22:12475573-12475287 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 251, 239

Conread position: 3-289
Cow position: chr22:12499686-12499972 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 251, 239

Conread position: 3-299
Cow position: chr22:12419320-12419024 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 3-368
Cow position: chr22:12385354-12384989 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-405
Cow position: chr22:12399280-12398874 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 64

Conread position: 4-391
Cow position: chr22:11641003-11641394 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 171

Conread position: 4-392
Cow position: chr22:12432183-12431791 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 249
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 316, 332

Conread position: 5-275
Cow position: chr22:12430838-12430568 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 180
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 62

Conread position: 5-311
Cow position: chr22:12431846-12431540 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 5-357
Cow position: chr22:11666593-11666945 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 222
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 23, 30

Conread position: 5-391
Cow position: chr22:12458546-12458156 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 257
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 354, 0

Conread position: 5-393
Cow position: chr22:46654327-46654715 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 258
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 70, 62

Conread position: 5-394
Cow position: chr22:11701247-11701640 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 253
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 171, 161

Conread position: 5-400
Cow position: chr22:46654159-46654558 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 264
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 70, 62

Conread position: 5-404
Cow position: chr22:12431594-12431188 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 257
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 321, 303

Conread position: 5-418
Cow position: chr22:12431342-12430922 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 314

Conread position: 6-197
Cow position: chr22:12385099-12384908 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 6-285
Cow position: chr22:12458041-12457762 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 6-321
Cow position: chr22:14430297-14430612 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 206
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 161, 140

Conread position: 6-356
Cow position: chr22:12498849-12499199 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 232, 218

Conread position: 6-358
Cow position: chr22:12431173-12430821 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 87, 81

Conread position: 6-358
Cow position: chr22:12499101-12499453 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 232
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 160, 153

Conread position: 6-368
Cow position: chr22:12475654-12475292 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-391
Cow position: chr22:14467954-14468343 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 249
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 304, 328

Conread position: 6-393
Cow position: chr22:12399445-12399054 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 332

Conread position: 6-394
Cow position: chr22:12385689-12385295 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 16

Conread position: 6-394
Cow position: chr22:12476410-12476018 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 218

Conread position: 6-396
Cow position: chr22:12399781-12399387 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 337

Conread position: 6-397
Cow position: chr22:46654076-46654472 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 266
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 75

Conread position: 6-401
Cow position: chr22:12498933-12499331 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 144, 149

Conread position: 6-413
Cow position: chr22:12476158-12475744 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 272
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 321, 332

Conread position: 6-418
Cow position: chr22:12475822-12475403 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 325, 332

Conread position: 7-234
Cow position: chr22:11666679-11666906 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 154, 162

Conread position: 7-234
Cow position: chr22:11701417-11701644 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 85, 73

Conread position: 7-337
Cow position: chr22:12430920-12430589 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 220
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 324, 0

Conread position: 7-356
Cow position: chr22:12385266-12384917 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 239

Conread position: 7-357
Cow position: chr22:12418795-12418445 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 303, 308

Conread position: 7-358
Cow position: chr22:11641090-11641441 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 114, 108

Conread position: 7-358
Cow position: chr22:12399858-12399513 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 19

Conread position: 7-359
Cow position: chr22:12399108-12398756 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 239

Conread position: 7-368
Cow position: chr22:11666511-11666872 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 226
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 85, 70

Conread position: 7-368
Cow position: chr22:12418879-12418518 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 235
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 324, 329

Conread position: 7-368
Cow position: chr22:12431088-12430727 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 158

Conread position: 7-380
Cow position: chr22:12458124-12457752 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 351, 358

Conread position: 7-385
Cow position: chr22:12431004-12430626 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 241
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 315, 306

Conread position: 7-391
Cow position: chr22:12385436-12385048 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 250

Conread position: 7-391
Cow position: chr22:12499270-12499658 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 353, 0

Conread position: 7-391
Cow position: chr22:12499522-12499910 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 376

Conread position: 7-392
Cow position: chr22:12418963-12418574 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 7-394
Cow position: chr22:11640922-11641313 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 254
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 148, 154

Conread position: 7-394
Cow position: chr22:12399360-12398969 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 321, 330

Conread position: 7-394
Cow position: chr22:12399696-12399305 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 228

Conread position: 7-394
Cow position: chr22:12475737-12475346 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 108

Conread position: 7-394
Cow position: chr22:12476073-12475682 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 7-394
Cow position: chr22:12499186-12499577 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 350, 0

Conread position: 7-396
Cow position: chr22:12399528-12399135 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 306

Conread position: 7-396
Cow position: chr22:12431676-12431283 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 257
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 251, 236

Conread position: 7-396
Cow position: chr22:12431760-12431367 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 260
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 313, 324

Conread position: 7-396
Cow position: chr22:12432012-12431619 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 256
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 169, 149

Conread position: 7-396
Cow position: chr22:12432264-12431871 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 0

Conread position: 7-396
Cow position: chr22:12432432-12432039 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 0

Conread position: 7-397
Cow position: chr22:11640670-11641065 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 256
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 248, 252

Conread position: 7-397
Cow position: chr22:12475905-12475510 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 7-400
Cow position: chr22:12432096-12431698 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 257
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 251, 236

Conread position: 7-400
Cow position: chr22:12499354-12499752 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 7-403
Cow position: chr22:12458460-12458058 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 262
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 323, 312

Conread position: 7-408
Cow position: chr22:14430214-14430618 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 258
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 74, 66

Conread position: 7-416
Cow position: chr22:12475989-12475573 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 7-417
Cow position: chr22:12431424-12431007 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 274
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 118, 108

Conread position: 8-308
Cow position: chr22:46654498-46654798 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 192
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 231, 238

Conread position: 13-281
Cow position: chr22:12385176-12384908 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 13-299
Cow position: chr22:14430640-14430926 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 178
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-356
Cow position: chr22:14430556-14430899 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 216
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 64

Conread position: 13-396
Cow position: chr22:14429549-14429935 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 241
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 80

Conread position: 13-396
Cow position: chr22:14429716-14430104 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 243, 235

Conread position: 13-433
Cow position: chr22:12476235-12475806 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 325

Conread position: 14-318
Cow position: chr22:14468130-14468434 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 199
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 165, 133

Conread position: 14-394
Cow position: chr22:14430473-14430857 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 236
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 139, 162

Conread position: 14-396
Cow position: chr22:12432341-12431955 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 322

Conread position: 16-368
Cow position: chr22:46654002-46654354 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 219
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 51

Conread position: 16-368
Cow position: chr22:46654422-46654774 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 220
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 19-396
Cow position: chr22:14430058-14430439 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 153, 141

Conread position: 24-396
Cow position: chr22:12432499-12432123 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 254
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 33

Conread position: 25-311
Cow position: chr22:14468225-14468511 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 139, 130

Conread position: 25-318
Cow position: chr22:14429980-14430273 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 191
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 157, 153

Conread position: 25-396
Cow position: chr22:11640772-11641147 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 245
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 304, 295

Conread position: 25-397
Cow position: chr22:14429644-14430021 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 242
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 309, 0

Conread position: 27-376
Cow position: chr22:12431908-12431559 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 65

Conread position: 30-394
Cow position: chr22:11666450-11666818 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 225
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 139, 129

Conread position: 30-418
Cow position: chr22:11701104-11701499 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 244
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 122, 136

Conread position: 36-394
Cow position: chr22:12419018-12418656 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 296, 309

Conread position: 37-394
Cow position: chr22:11640616-11640977 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 233
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 235, 230

Conread position: 41-416
Cow position: chr22:12399908-12399532 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 316, 69

Conread position: 68-356
Cow position: chr22:12385711-12385423 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 57, 41

Conread position: 92-330
Cow position: chr22:12419315-12419077 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 111-391
Cow position: chr22:12399923-12399644 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 17, 84

Conread position: 115-358
Cow position: chr22:12419023-12418780 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.