Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-356 |
| Cow position: | chr23:24547188-24546833 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-303 |
| Cow position: | chr23:24626452-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 3-394 |
| Cow position: | chr23:24547102-24546707 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-401 |
| Cow position: | chr23:24639276-24639677 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 4-155 |
| Cow position: | chr23:24522339-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-266 |
| Cow position: | chr23:25723982-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 254, 250 |
| Conread position: | 6-202 |
| Cow position: | chr23:24654180-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-213 |
| Cow position: | chr23:24639867-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-234 |
| Cow position: | chr23:24522421-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-260 |
| Cow position: | chr23:24546931-24546677 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-285 |
| Cow position: | chr23:25626762-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 6-298 |
| Cow position: | chr23:25626093-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-312 |
| Cow position: | chr23:25698425-25698118 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 6-315 |
| Cow position: | chr23:24535730-24535423 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 6-357 |
| Cow position: | chr23:24522670-24522322 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 236, 60 |
| Conread position: | 6-358 |
| Cow position: | chr23:24639699-24640051 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-358 |
| Cow position: | chr23:25626678-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 317, 313 |
| Conread position: | 6-359 |
| Cow position: | chr23:25698677-25698324 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 70, 61 |
| Conread position: | 6-364 |
| Cow position: | chr23:24560491-24560133 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 332 |
| Conread position: | 6-364 |
| Cow position: | chr23:25626009-25626367 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 74 |
| Conread position: | 6-392 |
| Cow position: | chr23:25626177-25626567 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 360, 0 |
| Conread position: | 6-396 |
| Cow position: | chr23:24639531-24639925 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 254 |
| Conread position: | 6-396 |
| Cow position: | chr23:25660298-25660692 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 6-401 |
| Cow position: | chr23:24547267-24546867 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 6-408 |
| Cow position: | chr23:25626429-25626833 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 106 |
| Conread position: | 7-188 |
| Cow position: | chr23:24546846-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-267 |
| Cow position: | chr23:25698340-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 7-286 |
| Cow position: | chr23:25660467-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-297 |
| Cow position: | chr23:24639784-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-312 |
| Cow position: | chr23:24522504-24522198 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 154, 139 |
| Conread position: | 7-317 |
| Cow position: | chr23:24560406-24560097 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 293, 267 |
| Conread position: | 7-358 |
| Cow position: | chr23:25660215-25660566 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 152 |
| Conread position: | 7-359 |
| Cow position: | chr23:24535813-24535461 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-365 |
| Cow position: | chr23:25626595-25626953 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 7-368 |
| Cow position: | chr23:24626372-24626731 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 301 |
| Conread position: | 7-394 |
| Cow position: | chr23:24560574-24560183 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 7-396 |
| Cow position: | chr23:24560658-24560265 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 7-396 |
| Cow position: | chr23:24639448-24639841 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 139 |
| Conread position: | 7-396 |
| Cow position: | chr23:25626346-25626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 303, 236 |
| Conread position: | 7-397 |
| Cow position: | chr23:24639364-24639759 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 17, 32 |
| Conread position: | 8-399 |
| Cow position: | chr23:24639197-24639592 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 183, 192 |
| Conread position: | 13-355 |
| Cow position: | chr23:24654103-24654444 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 13-356 |
| Cow position: | chr23:25660389-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 312, 323 |
| Conread position: | 13-357 |
| Cow position: | chr23:25724057-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 319, 326 |
| Conread position: | 13-396 |
| Cow position: | chr23:24535975-24535588 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 13-417 |
| Cow position: | chr23:24560820-24560409 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 22-232 |
| Cow position: | chr23:24521983-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-356 |
| Cow position: | chr23:25724131-25723798 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 23-396 |
| Cow position: | chr23:24560892-24560517 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 23-397 |
| Cow position: | chr23:24547334-24546955 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 25-414 |
| Cow position: | chr23:24626306-24626702 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 26-397 |
| Cow position: | chr23:24522569-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 150 |
| Conread position: | 27-358 |
| Cow position: | chr23:25626534-25626862 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 49 |
| Conread position: | 28-400 |
| Cow position: | chr23:24522814-24522442 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 244, 24 |
| Conread position: | 31-417 |
| Cow position: | chr23:24560718-24560325 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 36-318 |
| Cow position: | chr23:24535868-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-356 |
| Cow position: | chr23:24654042-24654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-394 |
| Cow position: | chr23:24522118-24521775 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 317, 109 |
| Conread position: | 42-394 |
| Cow position: | chr23:25625961-25626317 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 81, 73 |
| Conread position: | 43-394 |
| Cow position: | chr23:25660167-25660522 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 207, 196 |
| Conread position: | 43-400 |
| Cow position: | chr23:24536029-24535667 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 317, 0 |
| Conread position: | 48-399 |
| Cow position: | chr23:24639153-24639508 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 67-359 |
| Cow position: | chr23:25698700-25698408 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 95, 84 |
| Conread position: | 71-416 |
| Cow position: | chr23:24626268-24626620 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 88-396 |
| Cow position: | chr23:24560913-24560601 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 95-358 |
| Cow position: | chr23:25724143-25723880 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 95-391 |
| Cow position: | chr23:25660134-25660435 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 238 |
| Conread position: | 104-405 |
| Cow position: | chr23:24654024-24654333 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 105-356 |
| Cow position: | chr23:24536051-24535800 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-312 |
| Cow position: | chr23:24521982-24521777 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.