Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-119 |
| Cow position: | chr28:9253496-9253614 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-215 |
| Cow position: | chr28:7810732-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-285 |
| Cow position: | chr28:9253328-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-321 |
| Cow position: | chr28:9298874-9299192 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-358 |
| Cow position: | chr28:7758465-7758821 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 0 |
| Conread position: | 1-358 |
| Cow position: | chr28:7810564-7810921 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-368 |
| Cow position: | chr28:7757725-7758092 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-390 |
| Cow position: | chr28:9289813-9290202 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 235, 55 |
| Conread position: | 1-391 |
| Cow position: | chr28:9290061-9290450 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 145 |
| Conread position: | 1-396 |
| Cow position: | chr28:7757557-7757956 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 342 |
| Conread position: | 1-402 |
| Cow position: | chr28:7810321-7810718 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 204 |
| Conread position: | 1-408 |
| Cow position: | chr28:9298707-9299118 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 107 |
| Conread position: | 1-414 |
| Cow position: | chr28:7757473-7757893 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 343 |
| Conread position: | 1-414 |
| Cow position: | chr28:9290227-9290636 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 32 |
| Conread position: | 3-270 |
| Cow position: | chr28:9299448-9299712 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 183, 116 |
| Conread position: | 3-321 |
| Cow position: | chr28:34673498-34673816 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 3-340 |
| Cow position: | chr28:9290311-9290647 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 65 |
| Conread position: | 3-391 |
| Cow position: | chr28:9252909-9253302 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 4-364 |
| Cow position: | chr28:34696224-34696584 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-397 |
| Cow position: | chr28:34696056-34696454 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 165, 169 |
| Conread position: | 4-397 |
| Cow position: | chr28:34696140-34696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 164, 169 |
| Conread position: | 5-272 |
| Cow position: | chr28:7758065-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-304 |
| Cow position: | chr28:9253416-9253716 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 272 |
| Conread position: | 5-358 |
| Cow position: | chr28:34673416-34673769 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 76 |
| Conread position: | 5-369 |
| Cow position: | chr28:9299366-9299725 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 267, 204 |
| Conread position: | 5-391 |
| Cow position: | chr28:7757645-7758035 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 0 |
| Conread position: | 5-391 |
| Cow position: | chr28:7757813-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 0 |
| Conread position: | 5-418 |
| Cow position: | chr28:9298462-9298878 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 6-337 |
| Cow position: | chr28:33210290-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 6-368 |
| Cow position: | chr28:9253249-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-391 |
| Cow position: | chr28:9298796-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 326, 22 |
| Conread position: | 6-392 |
| Cow position: | chr28:9299283-9299670 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 287 |
| Conread position: | 6-396 |
| Cow position: | chr28:34679498-34679112 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 141, 117 |
| Conread position: | 6-409 |
| Cow position: | chr28:7757898-7758308 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 6-418 |
| Cow position: | chr28:9252997-9253416 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 6-418 |
| Cow position: | chr28:11333991-11333572 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 6-422 |
| Cow position: | chr28:7810494-7810907 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 43 |
| Conread position: | 7-235 |
| Cow position: | chr28:9290481-9290709 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-307 |
| Cow position: | chr28:11333654-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 153 |
| Conread position: | 7-319 |
| Cow position: | chr28:7809811-7810117 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 226, 0 |
| Conread position: | 7-358 |
| Cow position: | chr28:7757983-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-387 |
| Cow position: | chr28:7758387-7758765 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 7-391 |
| Cow position: | chr28:9253166-9253554 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 7-402 |
| Cow position: | chr28:9253082-9253482 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 8-253 |
| Cow position: | chr28:34679325-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 8-368 |
| Cow position: | chr28:9252584-9252938 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 147, 160 |
| Conread position: | 9-299 |
| Cow position: | chr28:7810656-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-305 |
| Cow position: | chr28:9290400-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 64 |
| Conread position: | 9-414 |
| Cow position: | chr28:7757397-7757809 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 23-416 |
| Cow position: | chr28:9289913-9290311 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 39 |
| Conread position: | 25-356 |
| Cow position: | chr28:34679561-34679229 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 25-374 |
| Cow position: | chr28:9299218-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 0 |
| Conread position: | 26-297 |
| Cow position: | chr28:34673353-34673624 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 139 |
| Conread position: | 28-358 |
| Cow position: | chr28:33210228-33210558 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 198, 211 |
| Conread position: | 30-396 |
| Cow position: | chr28:7757334-7757704 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 32-364 |
| Cow position: | chr28:9252524-9252855 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 207, 219 |
| Conread position: | 37-410 |
| Cow position: | chr28:11334212-11333834 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 320, 375 |
| Conread position: | 47-433 |
| Cow position: | chr28:7810283-7810671 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 254 |
| Conread position: | 83-356 |
| Cow position: | chr28:11334250-11333977 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 91-425 |
| Cow position: | chr28:7810252-7810577 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 304, 33 |
Show alignments to all cow chromosomes.