Cow genome map

Conread name: Ss1.1-End4-UMC-pd12_14end-006-a08.3

Conread position: 1-279
Cow position: chr3:68027485-68027763 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 188
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 156, 160

Conread position: 1-356
Cow position: chr3:62742919-62743252 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 236
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 85, 0

Conread position: 1-356
Cow position: chr3:68045658-68046013 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 13, 9

Conread position: 1-368
Cow position: chr3:68027233-68027600 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 234
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 321, 307

Conread position: 1-394
Cow position: chr3:68045742-68046139 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 158

Conread position: 1-409
Cow position: chr3:62742503-62742912 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 356, 138

Conread position: 3-396
Cow position: chr3:77351265-77350876 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 251
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 72

Conread position: 3-402
Cow position: chr3:62722350-62721946 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 271
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 29, 12

Conread position: 5-358
Cow position: chr3:62722096-62721743 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-261
Cow position: chr3:62721843-62721588 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 6-297
Cow position: chr3:77350850-77350564 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 156, 136

Conread position: 6-311
Cow position: chr3:68027406-68027711 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 235, 239

Conread position: 6-318
Cow position: chr3:62742257-62742568 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 82, 72

Conread position: 6-363
Cow position: chr3:68045999-68046356 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 234, 239

Conread position: 6-368
Cow position: chr3:62722179-62721817 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 243
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 162, 145

Conread position: 6-377
Cow position: chr3:62742673-62743039 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 77

Conread position: 6-378
Cow position: chr3:62743075-62743442 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 337, 41

Conread position: 6-394
Cow position: chr3:62722011-62721619 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 0

Conread position: 6-394
Cow position: chr3:62742424-62742811 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 251
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 182, 149

Conread position: 6-396
Cow position: chr3:62742592-62742982 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 267
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 295, 49

Conread position: 6-396
Cow position: chr3:68027154-68027548 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 255
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 185, 189

Conread position: 7-311
Cow position: chr3:62743155-62743459 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 151

Conread position: 7-311
Cow position: chr3:77350933-77350632 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 36, 24

Conread position: 7-358
Cow position: chr3:62721926-62721575 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-368
Cow position: chr3:77351094-77350740 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 244
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 116, 57

Conread position: 7-391
Cow position: chr3:68045580-68045968 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 66, 75

Conread position: 7-416
Cow position: chr3:68027323-68027739 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 16, 21

Conread position: 9-368
Cow position: chr3:68026990-68027348 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 238
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 66, 11

Conread position: 13-356
Cow position: chr3:68027077-68027420 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 262, 266

Conread position: 13-394
Cow position: chr3:62742348-62742729 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 194, 6

Conread position: 13-394
Cow position: chr3:68045922-68046307 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 0

Conread position: 13-396
Cow position: chr3:62722256-62721869 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 134

Conread position: 73-394
Cow position: chr3:68026969-68027294 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 109, 105

Show alignments to all cow chromosomes.