Cow genome map

Conread name: Ss1.1-End4-UMC-pd12_14end-006-a08.3

Conread position: 1-396
Cow position: chr7:1438306-1438705 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 126

Conread position: 1-402
Cow position: chr7:18390135-18390541 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 1-405
Cow position: chr7:11601046-11600639 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 163

Conread position: 3-340
Cow position: chr7:1014164-1014501 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 214
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 3-356
Cow position: chr7:1014332-1014679 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 228
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 302, 0

Conread position: 3-368
Cow position: chr7:42878629-42878264 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-391
Cow position: chr7:1014998-1015390 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 310

Conread position: 3-391
Cow position: chr7:3180428-3180817 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 386

Conread position: 3-394
Cow position: chr7:3179756-3180151 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 308

Conread position: 3-394
Cow position: chr7:3180260-3180655 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 3-396
Cow position: chr7:3180176-3180573 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 3-403
Cow position: chr7:42878881-42878476 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 151

Conread position: 3-416
Cow position: chr7:42878797-42878377 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 3-416
Cow position: chr7:42879049-42878629 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 312

Conread position: 3-417
Cow position: chr7:42878965-42878544 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 0

Conread position: 3-418
Cow position: chr7:42878713-42878291 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 0

Conread position: 3-422
Cow position: chr7:1014914-1015339 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 336

Conread position: 4-292
Cow position: chr7:11434511-11434223 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 188
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 164, 159

Conread position: 4-376
Cow position: chr7:8325801-8326176 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 252
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 81, 66

Conread position: 4-391
Cow position: chr7:8243195-8243585 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 251
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 161, 168

Conread position: 4-394
Cow position: chr7:8325297-8325691 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 80, 68

Conread position: 4-396
Cow position: chr7:8242859-8243255 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 253
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 316, 331

Conread position: 5-233
Cow position: chr7:1440035-1440263 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 148, 141

Conread position: 5-311
Cow position: chr7:1438226-1438532 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 5-337
Cow position: chr7:1438394-1438726 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 218
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 148, 156

Conread position: 5-391
Cow position: chr7:1439868-1440257 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 103

Conread position: 5-416
Cow position: chr7:42879131-42878713 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 0

Conread position: 5-425
Cow position: chr7:42879215-42878789 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 422

Conread position: 6-163
Cow position: chr7:1015337-1015496 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 6-266
Cow position: chr7:18390560-18390820 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 172
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 6-311
Cow position: chr7:8243448-8243753 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 195
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 160, 167

Conread position: 6-311
Cow position: chr7:8277406-8277711 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 193
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 154, 140

Conread position: 6-311
Cow position: chr7:8278246-8278549 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 196
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 91, 71

Conread position: 6-311
Cow position: chr7:11434586-11434288 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 242, 43

Conread position: 6-332
Cow position: chr7:1439953-1440278 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 22

Conread position: 6-358
Cow position: chr7:1015085-1015437 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 122

Conread position: 6-358
Cow position: chr7:3179927-3180279 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-358
Cow position: chr7:18390056-18390408 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 6-368
Cow position: chr7:1014833-1015195 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-391
Cow position: chr7:8277658-8278047 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 248
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 116, 109

Conread position: 6-394
Cow position: chr7:8243700-8244089 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 249
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 314, 295

Conread position: 6-394
Cow position: chr7:8324879-8325271 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 260
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 158, 149

Conread position: 6-394
Cow position: chr7:11601209-11600817 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 148

Conread position: 6-396
Cow position: chr7:1439448-1439844 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 140

Conread position: 6-396
Cow position: chr7:1439786-1440178 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 85

Conread position: 6-396
Cow position: chr7:3180347-3180741 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 0

Conread position: 6-396
Cow position: chr7:8324795-8325189 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 263
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 143, 166

Conread position: 6-396
Cow position: chr7:18390392-18390786 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 0

Conread position: 6-397
Cow position: chr7:1014419-1014809 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 271
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 155, 145

Conread position: 6-412
Cow position: chr7:8325131-8325540 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 265
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 162, 149

Conread position: 6-422
Cow position: chr7:1439703-1440122 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 58

Conread position: 6-422
Cow position: chr7:8277742-8278160 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 280
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 140, 165

Conread position: 7-298
Cow position: chr7:1015170-1015460 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 284, 0

Conread position: 7-318
Cow position: chr7:8324964-8325275 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 225, 252

Conread position: 7-358
Cow position: chr7:18390225-18390576 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 108

Conread position: 7-391
Cow position: chr7:1014750-1015138 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 108

Conread position: 7-396
Cow position: chr7:3180096-3180489 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 60

Conread position: 7-416
Cow position: chr7:8243617-8244027 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 248
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 324, 393

Conread position: 7-426
Cow position: chr7:3180012-3180437 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 336

Conread position: 9-357
Cow position: chr7:1438148-1438494 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 220
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 140, 48

Conread position: 9-394
Cow position: chr7:1014668-1015057 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 0

Conread position: 11-376
Cow position: chr7:11600784-11600420 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 143

Conread position: 13-311
Cow position: chr7:8325474-8325772 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 188
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 142, 160

Conread position: 13-323
Cow position: chr7:18390483-18390793 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 209
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 13-364
Cow position: chr7:8278001-8278354 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 160

Conread position: 13-393
Cow position: chr7:3179850-3180234 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 300

Conread position: 13-394
Cow position: chr7:18390315-18390700 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 0

Conread position: 13-396
Cow position: chr7:11600866-11600479 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 0

Conread position: 13-404
Cow position: chr7:11601118-11600723 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 263
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 237, 223

Conread position: 20-394
Cow position: chr7:18389986-18390364 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 244
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 137, 147

Conread position: 20-403
Cow position: chr7:42879452-42879064 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 241
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 9

Conread position: 23-356
Cow position: chr7:1014268-1014601 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 305, 290

Conread position: 25-311
Cow position: chr7:8277257-8277543 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 191
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 61, 42

Conread position: 25-369
Cow position: chr7:8278097-8278442 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 151, 133

Conread position: 25-394
Cow position: chr7:8325738-8326111 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 248
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 63

Conread position: 25-399
Cow position: chr7:42879363-42878984 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 16

Conread position: 26-394
Cow position: chr7:1014105-1014475 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 225
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 331, 19

Conread position: 28-416
Cow position: chr7:42879276-42878881 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 39

Conread position: 29-396
Cow position: chr7:8277597-8277968 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 236
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 283, 312

Conread position: 34-368
Cow position: chr7:8277854-8278188 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 217
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 145, 124

Conread position: 34-416
Cow position: chr7:8242805-8243190 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 246
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 138

Conread position: 37-314
Cow position: chr7:8277521-8277797 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 129, 121

Conread position: 43-390
Cow position: chr7:3179712-3180063 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 0

Conread position: 70-391
Cow position: chr7:3179655-3179980 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 210
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 53, 42

Conread position: 109-396
Cow position: chr7:8277257-8277548 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 185
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 126, 137

Conread position: 132-402
Cow position: chr7:11601250-11600976 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 177
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 228, 23

Show alignments to all cow chromosomes.