Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-376 |
| Cow position: | chr8:6958023-6957648 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 234, 247 |
| Conread position: | 3-312 |
| Cow position: | chr8:48407403-48407094 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-363 |
| Cow position: | chr8:55581049-55581411 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 3-394 |
| Cow position: | chr8:46816608-46817003 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 3-397 |
| Cow position: | chr8:48407319-48406920 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 243, 232 |
| Conread position: | 3-399 |
| Cow position: | chr8:46816860-46817261 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 3-402 |
| Cow position: | chr8:46816020-46816424 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 3-407 |
| Cow position: | chr8:46816188-46816599 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 0 |
| Conread position: | 3-408 |
| Cow position: | chr8:46816104-46816516 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 316 |
| Conread position: | 3-412 |
| Cow position: | chr8:46816692-46817108 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 323 |
| Conread position: | 3-417 |
| Cow position: | chr8:48407655-48407234 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 322, 335 |
| Conread position: | 3-418 |
| Cow position: | chr8:46816356-46816778 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-422 |
| Cow position: | chr8:46816440-46816865 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 336 |
| Conread position: | 3-425 |
| Cow position: | chr8:46816944-46817375 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 4-407 |
| Cow position: | chr8:46816525-46816935 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 4-414 |
| Cow position: | chr8:45201162-45201579 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 80 |
| Conread position: | 5-356 |
| Cow position: | chr8:45201835-45202176 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 137, 153 |
| Conread position: | 5-379 |
| Cow position: | chr8:45201583-45201955 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 338 |
| Conread position: | 5-396 |
| Cow position: | chr8:45201247-45201642 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 5-417 |
| Cow position: | chr8:46816778-46817197 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 0 |
| Conread position: | 6-223 |
| Cow position: | chr8:48406476-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-273 |
| Cow position: | chr8:46817115-46817382 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-311 |
| Cow position: | chr8:45201668-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-358 |
| Cow position: | chr8:48407232-48406880 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 156, 145 |
| Conread position: | 6-358 |
| Cow position: | chr8:48407568-48407216 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-362 |
| Cow position: | chr8:45201752-45202102 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 226, 234 |
| Conread position: | 6-365 |
| Cow position: | chr8:48406644-48406286 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 306, 295 |
| Conread position: | 6-368 |
| Cow position: | chr8:48407148-48406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 322, 302 |
| Conread position: | 6-389 |
| Cow position: | chr8:55581220-55581607 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 6-394 |
| Cow position: | chr8:48407484-48407092 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 313 |
| Conread position: | 6-396 |
| Cow position: | chr8:45201416-45201810 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 6-396 |
| Cow position: | chr8:45201500-45201894 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 309 |
| Conread position: | 6-396 |
| Cow position: | chr8:48407064-48406670 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 324, 307 |
| Conread position: | 6-396 |
| Cow position: | chr8:55580968-55581362 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 332 |
| Conread position: | 6-410 |
| Cow position: | chr8:45201080-45201491 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 7-357 |
| Cow position: | chr8:55581389-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-391 |
| Cow position: | chr8:55581137-55581525 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 220 |
| Conread position: | 7-394 |
| Cow position: | chr8:48406811-48406420 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 7-396 |
| Cow position: | chr8:45201333-45201726 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 7-416 |
| Cow position: | chr8:46816276-46816692 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 7-426 |
| Cow position: | chr8:45200829-45201249 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 306 |
| Conread position: | 9-407 |
| Cow position: | chr8:45200999-45201404 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 10-369 |
| Cow position: | chr8:46815940-46816302 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 13-394 |
| Cow position: | chr8:55580891-55581276 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 17-416 |
| Cow position: | chr8:46815785-46816188 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 140, 73 |
| Conread position: | 27-402 |
| Cow position: | chr8:55580736-55581117 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 28-363 |
| Cow position: | chr8:48406706-48406369 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 30-396 |
| Cow position: | chr8:45200936-45201306 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 308 |
| Conread position: | 41-358 |
| Cow position: | chr8:55580835-55581152 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-396 |
| Cow position: | chr8:45200786-45201138 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 101, 92 |
| Conread position: | 49-304 |
| Cow position: | chr8:6958059-6957804 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 133-356 |
| Cow position: | chr8:6958059-6957836 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.