Cow genome map
| Conread name: | Ss1.1-End4-UMC-pd12_14end-006-a08.3 |
| Conread position: | 1-391 |
| Cow position: | chrX:25310115-25310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 0 |
| Conread position: | 1-410 |
| Cow position: | chrX:25325026-25324610 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 0 |
| Conread position: | 2-364 |
| Cow position: | chrX:29045118-29044754 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 2-396 |
| Cow position: | chrX:29045202-29044804 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 2-407 |
| Cow position: | chrX:29045853-29045444 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 0 |
| Conread position: | 3-298 |
| Cow position: | chrX:29044949-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-363 |
| Cow position: | chrX:25325528-25325166 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-391 |
| Cow position: | chrX:29045285-29044893 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-393 |
| Cow position: | chrX:25325444-25325050 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 3-396 |
| Cow position: | chrX:25325192-25324795 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 0 |
| Conread position: | 3-396 |
| Cow position: | chrX:25325360-25324963 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 3-402 |
| Cow position: | chrX:25324940-25324536 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 144 |
| Conread position: | 3-416 |
| Cow position: | chrX:29045366-29044949 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 34 |
| Conread position: | 4-221 |
| Cow position: | chrX:25310370-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 4-401 |
| Cow position: | chrX:25310034-25310436 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 337 |
| Conread position: | 4-408 |
| Cow position: | chrX:25324855-25324444 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 0 |
| Conread position: | 4-408 |
| Cow position: | chrX:25325275-25324864 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 0 |
| Conread position: | 5-312 |
| Cow position: | chrX:29045682-29045375 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 5-358 |
| Cow position: | chrX:29045031-29044678 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-396 |
| Cow position: | chrX:25309951-25310346 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 328 |
| Conread position: | 5-396 |
| Cow position: | chrX:25324770-25324375 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 5-412 |
| Cow position: | chrX:25325610-25325196 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 315 |
| Conread position: | 6-286 |
| Cow position: | chrX:25324517-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-306 |
| Cow position: | chrX:12627333-12627632 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 71 |
| Conread position: | 6-368 |
| Cow position: | chrX:25309784-25310146 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 136 |
| Conread position: | 6-368 |
| Cow position: | chrX:25310204-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-368 |
| Cow position: | chrX:25324685-25324323 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-391 |
| Cow position: | chrX:25309700-25310089 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 7-305 |
| Cow position: | chrX:25310289-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 0 |
| Conread position: | 7-359 |
| Cow position: | chrX:25324600-25324248 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-391 |
| Cow position: | chrX:25309869-25310257 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 7-394 |
| Cow position: | chrX:25325692-25325301 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 301 |
| Conread position: | 7-400 |
| Cow position: | chrX:25325776-25325378 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 0 |
| Conread position: | 7-422 |
| Cow position: | chrX:25325104-25324683 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 306 |
| Conread position: | 18-323 |
| Cow position: | chrX:12627429-12627732 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 24-394 |
| Cow position: | chrX:25325843-25325469 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 25-359 |
| Cow position: | chrX:14181309-14180975 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 151, 145 |
| Conread position: | 64-396 |
| Cow position: | chrX:25325888-25325551 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 92 |
Show alignments to all cow chromosomes.