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Cow genome map

           
Conread name:
           
Ss1.1-Fet1-UMC-pd20fet-016-c11.3
        

               
Conread position:
               
15-223
               

               
Cow position:
               
chr4:40392812-40393026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
40, 120
               

               
Conread position:
               
17-203
               

               
Cow position:
               
chr4:51026347-51026543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
21-165
               

               
Cow position:
               
chr4:479787-479639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 98
               

               
Conread position:
               
21-189
               

               
Cow position:
               
chr4:48693604-48693773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
21-201
               

               
Cow position:
               
chr4:66168326-66168147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
21-211
               

               
Cow position:
               
chr4:54785927-54785730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
18, 101
               

               
Conread position:
               
21-224
               

               
Cow position:
               
chr4:25802696-25802906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
99, 204
               

               
Conread position:
               
21-225
               

               
Cow position:
               
chr4:65825819-65825607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
22-211
               

               
Cow position:
               
chr4:22215505-22215313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 95
               

               
Conread position:
               
22-212
               

               
Cow position:
               
chr4:34919263-34919070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
25-216
               

               
Cow position:
               
chr4:46404894-46404702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 15
               

               
Conread position:
               
25-221
               

               
Cow position:
               
chr4:386385-386186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
26-173
               

               
Cow position:
               
chr4:34983488-34983341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
119, 92
               

               
Conread position:
               
26-189
               

               
Cow position:
               
chr4:17186342-17186170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 11
               

               
Conread position:
               
26-189
               

               
Cow position:
               
chr4:32601845-32602004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
120, 92
               

               
Conread position:
               
26-194
               

               
Cow position:
               
chr4:42423797-42423620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
26-209
               

               
Cow position:
               
chr4:17851245-17851063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
25, 124
               

               
Conread position:
               
26-211
               

               
Cow position:
               
chr4:21161113-21161308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
26-211
               

               
Cow position:
               
chr4:37991600-37991792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
26-212
               

               
Cow position:
               
chr4:24810441-24810247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
26-215
               

               
Cow position:
               
chr4:51851214-51851417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
26-217
               

               
Cow position:
               
chr4:59002129-59001929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 13
               

               
Conread position:
               
27-189
               

               
Cow position:
               
chr4:41907571-41907404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
20, 92
               

               
Conread position:
               
27-190
               

               
Cow position:
               
chr4:48422888-48423047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
27-199
               

               
Cow position:
               
chr4:19097299-19097478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 166
               

               
Conread position:
               
27-202
               

               
Cow position:
               
chr4:53134607-53134788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
27-203
               

               
Cow position:
               
chr4:26659310-26659492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
27-211
               

               
Cow position:
               
chr4:561643-561834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
102, 80
               

               
Conread position:
               
27-211
               

               
Cow position:
               
chr4:22101254-22101060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
27-213
               

               
Cow position:
               
chr4:27530129-27530319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 117
               

               
Conread position:
               
27-213
               

               
Cow position:
               
chr4:56239849-56239662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 151
               

               
Conread position:
               
27-215
               

               
Cow position:
               
chr4:32693800-32693992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
27-217
               

               
Cow position:
               
chr4:17774339-17774157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 91
               

               
Conread position:
               
27-218
               

               
Cow position:
               
chr4:12867116-12867308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 32
               

               
Conread position:
               
27-218
               

               
Cow position:
               
chr4:49212729-49212542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
27-219
               

               
Cow position:
               
chr4:2713848-2713649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
27-223
               

               
Cow position:
               
chr4:23847040-23846844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
27-227
               

               
Cow position:
               
chr4:32561840-32562050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
27-231
               

               
Cow position:
               
chr4:33970886-33970682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 99
               

               
Conread position:
               
27-236
               

               
Cow position:
               
chr4:3283436-3283226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
18, 92
               

               
Conread position:
               
28-208
               

               
Cow position:
               
chr4:49808530-49808717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
29-207
               

               
Cow position:
               
chr4:27276530-27276344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
29-213
               

               
Cow position:
               
chr4:1985661-1985853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
29-214
               

               
Cow position:
               
chr4:22482338-22482523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
29-218
               

               
Cow position:
               
chr4:11506769-11506582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
97, 76
               

               
Conread position:
               
29-237
               

               
Cow position:
               
chr4:42608752-42608966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
31-212
               

               
Cow position:
               
chr4:52779866-52780050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
59, 127
               

               
Conread position:
               
31-214
               

               
Cow position:
               
chr4:38946232-38946421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
98, 22
               

               
Conread position:
               
31-217
               

               
Cow position:
               
chr4:33388872-33389068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
31-219
               

               
Cow position:
               
chr4:8182622-8182428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
31-219
               

               
Cow position:
               
chr4:45483814-45484012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
92, 80
               

               
Conread position:
               
31-220
               

               
Cow position:
               
chr4:30769051-30769241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
25, 21
               

               
Conread position:
               
31-245
               

               
Cow position:
               
chr4:37732467-37732249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 182
               

               
Conread position:
               
32-152
               

               
Cow position:
               
chr4:7808587-7808707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 99
               

               
Conread position:
               
32-189
               

               
Cow position:
               
chr4:34653853-34653697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 71
               

               
Conread position:
               
32-189
               

               
Cow position:
               
chr4:44681235-44681082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
32-202
               

               
Cow position:
               
chr4:68387808-68387979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
22, 7
               

               
Conread position:
               
32-211
               

               
Cow position:
               
chr4:17790275-17790096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
98, 86
               

               
Conread position:
               
32-214
               

               
Cow position:
               
chr4:10558552-10558739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
7, 91
               

               
Conread position:
               
36-219
               

               
Cow position:
               
chr4:19328608-19328794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
82, 16
               

               
Conread position:
               
37-188
               

               
Cow position:
               
chr4:48486016-48486173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
37-190
               

               
Cow position:
               
chr4:39091908-39092063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 81
               

               
Conread position:
               
37-190
               

               
Cow position:
               
chr4:60506294-60506455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
88, 148
               

               
Conread position:
               
37-193
               

               
Cow position:
               
chr4:508887-508725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
81, 135
               

               
Conread position:
               
37-193
               

               
Cow position:
               
chr4:10732245-10732403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr4:19501070-19500902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
99, 78
               

               
Conread position:
               
37-197
               

               
Cow position:
               
chr4:62370338-62370495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 66
               

               
Conread position:
               
37-203
               

               
Cow position:
               
chr4:34383320-34383146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
6, 18
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr4:12127617-12127445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
37-205
               

               
Cow position:
               
chr4:51083316-51083147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
89, 74
               

               
Conread position:
               
37-208
               

               
Cow position:
               
chr4:67393113-67393292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chr4:46566448-46566270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 139
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chr4:61608943-61608769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 81
               

               
Conread position:
               
37-214
               

               
Cow position:
               
chr4:22071650-22071463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
37-214
               

               
Cow position:
               
chr4:36290646-36290828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr4:4085089-4084904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr4:8083776-8083600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 81
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr4:43579391-43579210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
86, 155
               

               
Conread position:
               
37-215
               

               
Cow position:
               
chr4:62472101-62472280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
85, 119
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr4:5250209-5250399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr4:18974445-18974635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
97, 64
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr4:42044953-42044770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
89, 152
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr4:44773021-44772830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr4:65291834-65291657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
109, 67
               

               
Conread position:
               
37-219
               

               
Cow position:
               
chr4:47305099-47305289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
37-221
               

               
Cow position:
               
chr4:40414606-40414418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
37-223
               

               
Cow position:
               
chr4:19199265-19199071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
37-237
               

               
Cow position:
               
chr4:7698288-7698490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 23
               

               
Conread position:
               
37-242
               

               
Cow position:
               
chr4:13508219-13508004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
38-211
               

               
Cow position:
               
chr4:13919000-13919179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
85, 155
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr4:537741-537565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
39-202
               

               
Cow position:
               
chr4:50837725-50837894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr4:19102861-19102675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
14, 169
               

               
Conread position:
               
40-188
               

               
Cow position:
               
chr4:21506934-21506789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 79
               

               
Conread position:
               
40-191
               

               
Cow position:
               
chr4:28854250-28854096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
89, 78
               

               
Conread position:
               
40-191
               

               
Cow position:
               
chr4:43916310-43916473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
40-197
               

               
Cow position:
               
chr4:22010033-22009876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 17
               

               
Conread position:
               
40-201
               

               
Cow position:
               
chr4:49800716-49800886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 65
               

               
Conread position:
               
40-202
               

               
Cow position:
               
chr4:47048139-47048310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
40-203
               

               
Cow position:
               
chr4:21874197-21874370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
40-204
               

               
Cow position:
               
chr4:38157066-38156901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
40-204
               

               
Cow position:
               
chr4:61391205-61391041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chr4:19435277-19435444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chr4:19578407-19578577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
14, 125
               

               
Conread position:
               
40-205
               

               
Cow position:
               
chr4:33838778-33838607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
40-206
               

               
Cow position:
               
chr4:20027081-20026910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 60
               

               
Conread position:
               
40-206
               

               
Cow position:
               
chr4:49158772-49158597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
40-207
               

               
Cow position:
               
chr4:32789981-32789815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
20, 77
               

               
Conread position:
               
40-207
               

               
Cow position:
               
chr4:38944236-38944062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
40-209
               

               
Cow position:
               
chr4:23509618-23509789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
91, 142
               

               
Conread position:
               
40-209
               

               
Cow position:
               
chr4:30647880-30648046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
40-209
               

               
Cow position:
               
chr4:60302980-60302817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
106, 22
               

               
Conread position:
               
40-210
               

               
Cow position:
               
chr4:59277457-59277267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr4:4084428-4084255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 91
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr4:39010071-39010260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
40-211
               

               
Cow position:
               
chr4:65463484-65463310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
106, 83
               

               
Conread position:
               
40-212
               

               
Cow position:
               
chr4:30691026-30691202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
13, 160
               

               
Conread position:
               
40-212
               

               
Cow position:
               
chr4:39569228-39569398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
106, 78
               

               
Conread position:
               
40-213
               

               
Cow position:
               
chr4:29318054-29317868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 152
               

               
Conread position:
               
40-214
               

               
Cow position:
               
chr4:16239146-16238968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
13, 171
               

               
Conread position:
               
40-214
               

               
Cow position:
               
chr4:29291536-29291709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
40-215
               

               
Cow position:
               
chr4:23271307-23271488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 110
               

               
Conread position:
               
40-215
               

               
Cow position:
               
chr4:42374134-42373950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
40-215
               

               
Cow position:
               
chr4:53347948-53347777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
40-216
               

               
Cow position:
               
chr4:28839642-28839818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
53, 46
               

               
Conread position:
               
40-218
               

               
Cow position:
               
chr4:19315983-19315791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
40-218
               

               
Cow position:
               
chr4:33360126-33360299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
40-218
               

               
Cow position:
               
chr4:39007529-39007706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
106, 78
               

               
Conread position:
               
40-220
               

               
Cow position:
               
chr4:44903316-44903492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 90
               

               
Conread position:
               
40-221
               

               
Cow position:
               
chr4:69290721-69290526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
40-228
               

               
Cow position:
               
chr4:53126136-53126322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
106, 77
               

               
Conread position:
               
40-229
               

               
Cow position:
               
chr4:2770098-2770292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
40-236
               

               
Cow position:
               
chr4:18951995-18952204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
41-185
               

               
Cow position:
               
chr4:59608159-59608022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
99, 71
               

               
Conread position:
               
41-189
               

               
Cow position:
               
chr4:34700011-34699866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 86
               

               
Conread position:
               
41-189
               

               
Cow position:
               
chr4:36070728-36070880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
41-189
               

               
Cow position:
               
chr4:59015611-59015758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
12, 75
               

               
Conread position:
               
41-209
               

               
Cow position:
               
chr4:34562407-34562579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
41-210
               

               
Cow position:
               
chr4:36841292-36841462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
91, 61
               

               
Conread position:
               
41-212
               

               
Cow position:
               
chr4:68776961-68777143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 62
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr4:23943619-23943440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
93, 77
               

               
Conread position:
               
41-215
               

               
Cow position:
               
chr4:49794682-49794853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
41-216
               

               
Cow position:
               
chr4:60141496-60141315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
97, 77
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr4:19119040-19119228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
13, 184
               

               
Conread position:
               
41-218
               

               
Cow position:
               
chr4:22849468-22849295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
42-211
               

               
Cow position:
               
chr4:20153522-20153354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
42-253
               

               
Cow position:
               
chr4:7043792-7043573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
83, 11
               

               
Conread position:
               
43-210
               

               
Cow position:
               
chr4:29384207-29384042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 81
               

               
Conread position:
               
43-273
               

               
Cow position:
               
chr4:348396-348174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
86, 10
               

               
Conread position:
               
44-165
               

               
Cow position:
               
chr4:56805205-56805326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
102, 74
               

               
Conread position:
               
44-188
               

               
Cow position:
               
chr4:54171655-54171802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
44-189
               

               
Cow position:
               
chr4:13344567-13344714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
44-189
               

               
Cow position:
               
chr4:27511573-27511726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 57
               

               
Conread position:
               
44-189
               

               
Cow position:
               
chr4:53208322-53208461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
44-195
               

               
Cow position:
               
chr4:26901356-26901506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
44-200
               

               
Cow position:
               
chr4:61969697-61969536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
44-202
               

               
Cow position:
               
chr4:3268336-3268179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
44-206
               

               
Cow position:
               
chr4:23600196-23600364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 134
               

               
Conread position:
               
44-208
               

               
Cow position:
               
chr4:58045606-58045435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 9
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr4:51728108-51728272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
102, 85
               

               
Conread position:
               
44-212
               

               
Cow position:
               
chr4:48227659-48227491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
44-212
               

               
Cow position:
               
chr4:66122338-66122168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
85, 74
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr4:46136779-46136950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 67
               

               
Conread position:
               
44-214
               

               
Cow position:
               
chr4:25929245-25929411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
44-214
               

               
Cow position:
               
chr4:56395541-56395725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
44-214
               

               
Cow position:
               
chr4:59785351-59785524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
89, 82
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr4:17051257-17051076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 67
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr4:60363379-60363555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
82, 29
               

               
Conread position:
               
44-216
               

               
Cow position:
               
chr4:61887665-61887845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 166
               

               
Conread position:
               
44-217
               

               
Cow position:
               
chr4:48104540-48104358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
44-218
               

               
Cow position:
               
chr4:12713998-12713823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 132
               

               
Conread position:
               
44-221
               

               
Cow position:
               
chr4:22138193-22138006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr4:23646829-23646656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
102, 37
               

               
Conread position:
               
44-224
               

               
Cow position:
               
chr4:40995759-40995952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
44-236
               

               
Cow position:
               
chr4:43740563-43740757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
44-252
               

               
Cow position:
               
chr4:60719130-60719329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
44-280
               

               
Cow position:
               
chr4:12716867-12716632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 131
               

               
Conread position:
               
46-219
               

               
Cow position:
               
chr4:26333165-26332992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
46-219
               

               
Cow position:
               
chr4:26335332-26335159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
85, 51
               

               
Conread position:
               
47-199
               

               
Cow position:
               
chr4:48046376-48046228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
99, 23
               

               
Conread position:
               
47-203
               

               
Cow position:
               
chr4:45724894-45725058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
46, 31
               

               
Conread position:
               
47-217
               

               
Cow position:
               
chr4:59557472-59557651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
50-218
               

               
Cow position:
               
chr4:19496951-19496770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
51-215
               

               
Cow position:
               
chr4:53050028-53050199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
52-215
               

               
Cow position:
               
chr4:6073018-6072847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
53-170
               

               
Cow position:
               
chr4:22331162-22331284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr4:3421660-3421802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr4:21531606-21531462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr4:29842864-29842997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 62
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr4:37915298-37915160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
53-189
               

               
Cow position:
               
chr4:44854253-44854109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
85, 64
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr4:60955365-60955515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr4:27425749-27425901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 64
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr4:66412224-66412375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
53-203
               

               
Cow position:
               
chr4:66509675-66509820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
93, 70
               

               
Conread position:
               
53-204
               

               
Cow position:
               
chr4:30250233-30250089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
140, 65
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr4:12748375-12748227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr4:26959931-26959772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr4:34509878-34510026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
93, 71
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr4:46235122-46234968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr4:8675407-8675563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr4:56513970-56513816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
91, 57
               

               
Conread position:
               
53-207
               

               
Cow position:
               
chr4:68076500-68076343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr4:55694212-55694369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
53-209
               

               
Cow position:
               
chr4:61524470-61524628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr4:12908411-12908568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
93, 64
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr4:27521590-27521759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr4:38209937-38209772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 64
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr4:65173140-65173303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
81, 63
               

               
Conread position:
               
53-210
               

               
Cow position:
               
chr4:69458238-69458395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
93, 121
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr4:13194002-13194164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr4:28701396-28701545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
53-211
               

               
Cow position:
               
chr4:46656167-46656334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr4:12245250-12245413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 11
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr4:22713454-22713294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
86, 16
               

               
Conread position:
               
53-212
               

               
Cow position:
               
chr4:68590809-68590970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
69, 96
               

               
Conread position:
               
53-213
               

               
Cow position:
               
chr4:38940905-38940744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr4:3340990-3341161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 125
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr4:28772029-28771868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 135
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr4:31177862-31178027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 64
               

               
Conread position:
               
53-214
               

               
Cow position:
               
chr4:34641688-34641520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 42
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr4:16637037-16636872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
53-215
               

               
Cow position:
               
chr4:19200150-19200312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
53, 41
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:3519459-3519625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
81, 65
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:30943992-30944165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:36876820-36876648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 21
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:45801553-45801726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 48
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:47230960-47230790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:47283975-47283805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
53-218
               

               
Cow position:
               
chr4:61999160-61998990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
53-219
               

               
Cow position:
               
chr4:42231986-42231825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
53-219
               

               
Cow position:
               
chr4:45626589-45626426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
90, 35
               

               
Conread position:
               
53-220
               

               
Cow position:
               
chr4:4319114-4318941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
53-221
               

               
Cow position:
               
chr4:28660513-28660333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
53-221
               

               
Cow position:
               
chr4:35982037-35982212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
68, 35
               

               
Conread position:
               
53-222
               

               
Cow position:
               
chr4:43909799-43909973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 150
               

               
Conread position:
               
53-227
               

               
Cow position:
               
chr4:10968351-10968181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
79, 64
               

               
Conread position:
               
53-238
               

               
Cow position:
               
chr4:51617961-51617769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
70, 172
               

               
Conread position:
               
53-238
               

               
Cow position:
               
chr4:60527218-60527406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
73, 110
               

               
Conread position:
               
53-239
               

               
Cow position:
               
chr4:45840436-45840621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
93, 65
               

               
Conread position:
               
53-247
               

               
Cow position:
               
chr4:45213149-45212949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
81, 49
               

               
Conread position:
               
53-293
               

               
Cow position:
               
chr4:4320953-4320710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
64, 205
               

               
Conread position:
               
54-202
               

               
Cow position:
               
chr4:36929348-36929488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
54-207
               

               
Cow position:
               
chr4:19420718-19420560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
65, 99
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr4:12676838-12676994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 52
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr4:18099023-18098860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr4:20327670-20327522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
92, 68
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr4:59105644-59105485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
54-211
               

               
Cow position:
               
chr4:66547729-66547560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
54-213
               

               
Cow position:
               
chr4:44184076-44183918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
54-214
               

               
Cow position:
               
chr4:19238256-19238426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr4:59755605-59755447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 64
               

               
Conread position:
               
54-215
               

               
Cow position:
               
chr4:62821017-62820849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
54-218
               

               
Cow position:
               
chr4:85733-85903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
41, 158
               

               
Conread position:
               
54-218
               

               
Cow position:
               
chr4:52823363-52823190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
54-221
               

               
Cow position:
               
chr4:10786101-10785932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
55-189
               

               
Cow position:
               
chr4:972742-972604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 12
               

               
Conread position:
               
55-189
               

               
Cow position:
               
chr4:29805334-29805191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
55-213
               

               
Cow position:
               
chr4:19744915-19745072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 63
               

               
Conread position:
               
56-218
               

               
Cow position:
               
chr4:27657017-27657179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
57-195
               

               
Cow position:
               
chr4:14964870-14965004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
57-203
               

               
Cow position:
               
chr4:61066807-61066946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
89, 61
               

               
Conread position:
               
57-235
               

               
Cow position:
               
chr4:19503970-19504150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
59-211
               

               
Cow position:
               
chr4:14131471-14131625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
75, 58
               

               
Conread position:
               
59-216
               

               
Cow position:
               
chr4:58018389-58018545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
59-265
               

               
Cow position:
               
chr4:20147227-20147432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
64, 170
               

               
Conread position:
               
60-218
               

               
Cow position:
               
chr4:63198327-63198157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
61-206
               

               
Cow position:
               
chr4:57556531-57556674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
67-200
               

               
Cow position:
               
chr4:19089949-19090081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
68-218
               

               
Cow position:
               
chr4:8389029-8388872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
68-218
               

               
Cow position:
               
chr4:63183629-63183478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
78, 135
               

               
Conread position:
               
69-189
               

               
Cow position:
               
chr4:17124257-17124131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
70-214
               

               
Cow position:
               
chr4:66172736-66172592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
70-215
               

               
Cow position:
               
chr4:34544361-34544511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
71-191
               

               
Cow position:
               
chr4:12666086-12666211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
74-211
               

               
Cow position:
               
chr4:3687987-3688130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
79-211
               

               
Cow position:
               
chr4:3299732-3299596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
89-216
               

               
Cow position:
               
chr4:22701736-22701607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
45, 34
               
Show alignments to all cow chromosomes.