Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 845-1542 |
| Cow position: | chr17:22552361-22551664 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 846-1548 |
| Cow position: | chr17:41441051-41440349 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 847-1405 |
| Cow position: | chr17:22589777-22589219 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 339 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 61, 68 |
| Conread position: | 858-1205 |
| Cow position: | chr17:22551846-22551497 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 859-1223 |
| Cow position: | chr17:22473587-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 859-1457 |
| Cow position: | chr17:22499142-22498544 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 359 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 860-1122 |
| Cow position: | chr17:22498805-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 860-1539 |
| Cow position: | chr17:22552262-22551583 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 316 |
| Conread position: | 860-1544 |
| Cow position: | chr17:22590268-22589584 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 868-1151 |
| Cow position: | chr17:22452119-22451836 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 868-1544 |
| Cow position: | chr17:22552506-22551830 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 294 |
| Conread position: | 869-1544 |
| Cow position: | chr17:22552673-22551998 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 386 |
| Conread position: | 871-1486 |
| Cow position: | chr17:22589837-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 367 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 872-1541 |
| Cow position: | chr17:44467454-44468123 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 873-1548 |
| Cow position: | chr17:41440940-41440265 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 383 |
| Conread position: | 874-1457 |
| Cow position: | chr17:41440771-41440188 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 874-1539 |
| Cow position: | chr17:22590002-22589337 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 328 |
| Conread position: | 874-1542 |
| Cow position: | chr17:22552164-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 134 |
| Conread position: | 875-1373 |
| Cow position: | chr17:22473435-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 875-1539 |
| Cow position: | chr17:22589917-22589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 397 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 875-1542 |
| Cow position: | chr17:41440854-41440187 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 875-1544 |
| Cow position: | chr17:22590085-22589416 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 397 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 875-1548 |
| Cow position: | chr17:22499294-22498621 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 301 |
| Conread position: | 881-1329 |
| Cow position: | chr17:22452190-22451742 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 881-1548 |
| Cow position: | chr17:22552829-22552162 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 881-1548 |
| Cow position: | chr17:41441100-41440433 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 914-1422 |
| Cow position: | chr17:22452241-22451733 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 307 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 914-1460 |
| Cow position: | chr17:44467832-44468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 324 |
| Conread position: | 920-1543 |
| Cow position: | chr17:22452403-22451780 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 372 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 923-1542 |
| Cow position: | chr17:22499330-22498711 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 315 |
| Conread position: | 923-1544 |
| Cow position: | chr17:22552535-22551914 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 505 |
| Conread position: | 923-1544 |
| Cow position: | chr17:22552703-22552082 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 923-1548 |
| Cow position: | chr17:22552955-22552330 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 71 |
| Conread position: | 935-1537 |
| Cow position: | chr17:44467685-44468287 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 303 |
| Conread position: | 935-1541 |
| Cow position: | chr17:44467433-44468039 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 938-1544 |
| Cow position: | chr17:22553108-22552502 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 361 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 490, 468 |
| Conread position: | 939-1544 |
| Cow position: | chr17:22499398-22498793 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 364 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 313, 303 |
| Conread position: | 946-1541 |
| Cow position: | chr17:22473338-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 358 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 320, 289 |
| Conread position: | 947-1542 |
| Cow position: | chr17:41441118-41440523 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 441 |
| Conread position: | 1006-1541 |
| Cow position: | chr17:44467840-44468375 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 232 |
| Conread position: | 1007-1548 |
| Cow position: | chr17:22452400-22451859 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 237 |
| Conread position: | 1019-1542 |
| Cow position: | chr17:44467685-44468208 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 219 |
| Conread position: | 1026-1541 |
| Cow position: | chr17:44467355-44467871 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 213 |
| Conread position: | 1080-1542 |
| Cow position: | chr17:22452411-22451949 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1097-1542 |
| Cow position: | chr17:44467340-44467788 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 21, 337 |
| Conread position: | 1127-1544 |
| Cow position: | chr17:22473267-22473684 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1170-1544 |
| Cow position: | chr17:22553128-22552754 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1195-1548 |
| Cow position: | chr17:22499394-22499041 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 63, 45 |
| Conread position: | 1203-1548 |
| Cow position: | chr17:41441114-41440769 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 1362-1548 |
| Cow position: | chr17:44467355-44467542 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1367-1548 |
| Cow position: | chr17:41441118-41440937 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.