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Cow genome map

           
Conread name:
           
Ss1.1-Liv1-LVR010001G06.5
        

               
Conread position:
               
3-249
               

               
Cow position:
               
chr18:55952176-55952439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
66, 197
               

               
Conread position:
               
244-375
               

               
Cow position:
               
chr18:43143692-43143823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
244-375
               

               
Cow position:
               
chr18:55954136-55954267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chr18:53618504-53618374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chr18:53646080-53645950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chr18:55506810-55506680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
245-375
               

               
Cow position:
               
chr18:55531946-55531816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
254-378
               

               
Cow position:
               
chr18:56332258-56332134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
381-520
               

               
Cow position:
               
chr18:56126912-56127051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
518-1533
               

               
Cow position:
               
chr18:55498039-55497030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1020
               

               
Alignm identity:
               
672
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 326
               

               
Conread position:
               
518-1542
               

               
Cow position:
               
chr18:53610893-53609866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1030
               

               
Alignm identity:
               
694
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 344
               

               
Conread position:
               
518-1548
               

               
Cow position:
               
chr18:40305827-40306860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1038
               

               
Alignm identity:
               
670
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 191
               

               
Conread position:
               
518-1548
               

               
Cow position:
               
chr18:53636470-53635437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1034
               

               
Alignm identity:
               
866
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
520-1548
               

               
Cow position:
               
chr18:56127700-56128728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
1029
               

               
Alignm identity:
               
899
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
834-1542
               

               
Cow position:
               
chr18:52447505-52448213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
712
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 32
               

               
Conread position:
               
837-1283
               

               
Cow position:
               
chr18:44184402-44183956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
843-1380
               

               
Cow position:
               
chr18:53610229-53609693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 61
               

               
Conread position:
               
844-1541
               

               
Cow position:
               
chr18:53635721-53635025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
500
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
844-1548
               

               
Cow position:
               
chr18:49033227-49032523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
708
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 71
               

               
Conread position:
               
844-1548
               

               
Cow position:
               
chr18:53635973-53635269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
468
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 164
               

               
Conread position:
               
844-1548
               

               
Cow position:
               
chr18:56128444-56129147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
501
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
845-1231
               

               
Cow position:
               
chr18:51812392-51812007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
845-1527
               

               
Cow position:
               
chr18:40306661-40307343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
845-1536
               

               
Cow position:
               
chr18:51789653-51788962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
845-1542
               

               
Cow position:
               
chr18:51812812-51812115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
71, 60
               

               
Conread position:
               
846-1542
               

               
Cow position:
               
chr18:51812979-51812283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 69
               

               
Conread position:
               
847-1151
               

               
Cow position:
               
chr18:49032384-49032080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
847-1151
               

               
Cow position:
               
chr18:50282000-50282304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
847-1454
               

               
Cow position:
               
chr18:53525850-53526455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 64
               

               
Conread position:
               
847-1499
               

               
Cow position:
               
chr18:53509396-53510047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
661
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 64
               

               
Conread position:
               
847-1542
               

               
Cow position:
               
chr18:56329693-56328998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 68
               

               
Conread position:
               
847-1548
               

               
Cow position:
               
chr18:49033140-49032439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
705
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
847-1548
               

               
Cow position:
               
chr18:49033392-49032691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
476
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 87
               

               
Conread position:
               
847-1548
               

               
Cow position:
               
chr18:56329525-56328823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 77
               

               
Conread position:
               
848-1313
               

               
Cow position:
               
chr18:52012032-52011567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 56
               

               
Conread position:
               
848-1380
               

               
Cow position:
               
chr18:33093031-33092499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
76, 56
               

               
Conread position:
               
848-1396
               

               
Cow position:
               
chr18:50848830-50849378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
848-1542
               

               
Cow position:
               
chr18:50099134-50099828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
848-1542
               

               
Cow position:
               
chr18:56316208-56316902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
448
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
848-1543
               

               
Cow position:
               
chr18:51789818-51789123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
848-1543
               

               
Cow position:
               
chr18:52427792-52428487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
158, 148
               

               
Conread position:
               
848-1543
               

               
Cow position:
               
chr18:52433141-52433836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
158, 148
               

               
Conread position:
               
848-1544
               

               
Cow position:
               
chr18:33064779-33064083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
699
               

               
Alignm identity:
               
433
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 147
               

               
Conread position:
               
848-1544
               

               
Cow position:
               
chr18:49032971-49032275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
454
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
848-1548
               

               
Cow position:
               
chr18:50848662-50849362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
707
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
848-1548
               

               
Cow position:
               
chr18:51839486-51838786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
706
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 67
               

               
Conread position:
               
855-1544
               

               
Cow position:
               
chr18:50848502-50849190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
856-1234
               

               
Cow position:
               
chr18:43168127-43168505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
856-1348
               

               
Cow position:
               
chr18:50083785-50084277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
16, 10
               

               
Conread position:
               
856-1489
               

               
Cow position:
               
chr18:49032711-49032078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 52
               

               
Conread position:
               
856-1544
               

               
Cow position:
               
chr18:41197994-41198682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
856-1544
               

               
Cow position:
               
chr18:43167791-43168479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
856-1544
               

               
Cow position:
               
chr18:44398438-44397752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
856-1548
               

               
Cow position:
               
chr18:42791636-42792327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
856-1548
               

               
Cow position:
               
chr18:49033047-49032355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
440
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
856-1548
               

               
Cow position:
               
chr18:54979728-54980419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
701
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
856-1548
               

               
Cow position:
               
chr18:54979977-54980670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
7, 318
               

               
Conread position:
               
857-1233
               

               
Cow position:
               
chr18:40324296-40323921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
857-1281
               

               
Cow position:
               
chr18:1418170-1418594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
857-1423
               

               
Cow position:
               
chr18:50048718-50048159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
857-1537
               

               
Cow position:
               
chr18:40075024-40075703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 12
               

               
Conread position:
               
857-1542
               

               
Cow position:
               
chr18:52427718-52428402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
857-1548
               

               
Cow position:
               
chr18:53635791-53635101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
447
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
858-1465
               

               
Cow position:
               
chr18:55066943-55066334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
858-1544
               

               
Cow position:
               
chr18:50848168-50848854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
858-1548
               

               
Cow position:
               
chr18:42791803-42792495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 58
               

               
Conread position:
               
859-1191
               

               
Cow position:
               
chr18:14453202-14452870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 37
               

               
Conread position:
               
859-1225
               

               
Cow position:
               
chr18:42674815-42674449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
46, 56
               

               
Conread position:
               
859-1284
               

               
Cow position:
               
chr18:41948758-41948333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
859-1287
               

               
Cow position:
               
chr18:56316639-56317067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
859-1290
               

               
Cow position:
               
chr18:52428558-52428990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
859-1290
               

               
Cow position:
               
chr18:52433739-52434171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
13, 148
               

               
Conread position:
               
859-1378
               

               
Cow position:
               
chr18:42792394-42792913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 7
               

               
Conread position:
               
859-1401
               

               
Cow position:
               
chr18:43022565-43022023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
138, 129
               

               
Conread position:
               
859-1445
               

               
Cow position:
               
chr18:41948842-41948258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
304, 317
               

               
Conread position:
               
859-1542
               

               
Cow position:
               
chr18:52433235-52433919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
859-1543
               

               
Cow position:
               
chr18:52428054-52428739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 150
               

               
Conread position:
               
859-1548
               

               
Cow position:
               
chr18:40306339-40307028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
442
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
859-1548
               

               
Cow position:
               
chr18:41197661-41198350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
477, 484
               

               
Conread position:
               
859-1548
               

               
Cow position:
               
chr18:53610381-53609693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 120
               

               
Conread position:
               
859-1548
               

               
Cow position:
               
chr18:55067026-55066335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 149
               

               
Conread position:
               
859-1548
               

               
Cow position:
               
chr18:56128375-56129064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
446
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 51
               

               
Conread position:
               
860-1296
               

               
Cow position:
               
chr18:49022817-49023253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
860-1317
               

               
Cow position:
               
chr18:42837597-42837140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
391, 371
               

               
Conread position:
               
860-1458
               

               
Cow position:
               
chr18:55523731-55524328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
591, 0
               

               
Conread position:
               
860-1464
               

               
Cow position:
               
chr18:43175101-43174497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
303, 315
               

               
Conread position:
               
860-1493
               

               
Cow position:
               
chr18:55008730-55009361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
640
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
860-1529
               

               
Cow position:
               
chr18:53560097-53560766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
860-1542
               

               
Cow position:
               
chr18:56316052-56316734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
860-1543
               

               
Cow position:
               
chr18:42744546-42743863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 44
               

               
Conread position:
               
860-1543
               

               
Cow position:
               
chr18:42791219-42791902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:40324881-40324197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
66, 73
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:41949261-41948577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 44
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:42791723-42792407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:42791975-42792659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:42837849-42837165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 53
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:42985305-42984621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 148
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:44253804-44253133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:54967206-54967887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
279, 313
               

               
Conread position:
               
860-1544
               

               
Cow position:
               
chr18:55018219-55018902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
402
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
860-1546
               

               
Cow position:
               
chr18:54980067-54980749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
428
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:40306508-40307196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 48
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:50049224-50048532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:53509241-53509929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 148
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:53525695-53526383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
692
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 148
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:54967791-54968477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:54979815-54980503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
60, 41
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:54992991-54993679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
316, 293
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:55008646-55009333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 34
               

               
Conread position:
               
860-1548
               

               
Cow position:
               
chr18:56247988-56247298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
702
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
861-1542
               

               
Cow position:
               
chr18:50848338-50849020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 141
               

               
Conread position:
               
861-1544
               

               
Cow position:
               
chr18:43175269-43174585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 55
               

               
Conread position:
               
862-1335
               

               
Cow position:
               
chr18:41198251-41198725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
862-1403
               

               
Cow position:
               
chr18:50083706-50084248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
10, 136
               

               
Conread position:
               
862-1534
               

               
Cow position:
               
chr18:44398183-44397510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 144
               

               
Conread position:
               
862-1543
               

               
Cow position:
               
chr18:40074943-40075625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
862-1544
               

               
Cow position:
               
chr18:42744629-42743946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 55
               

               
Conread position:
               
862-1544
               

               
Cow position:
               
chr18:44398267-44397584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
862-1548
               

               
Cow position:
               
chr18:43093904-43093231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
37, 13
               

               
Conread position:
               
862-1548
               

               
Cow position:
               
chr18:53586911-53586224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
693
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
862-1548
               

               
Cow position:
               
chr18:54992740-54993427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
862-1548
               

               
Cow position:
               
chr18:54993160-54993847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
694
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
862-1548
               

               
Cow position:
               
chr18:55018052-55018740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
10, 140
               

               
Conread position:
               
866-1536
               

               
Cow position:
               
chr18:51812876-51812205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
867-1544
               

               
Cow position:
               
chr18:40306599-40307276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 23
               

               
Conread position:
               
868-1197
               

               
Cow position:
               
chr18:50246508-50246837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 41
               

               
Conread position:
               
868-1201
               

               
Cow position:
               
chr18:50295535-50295868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
868-1225
               

               
Cow position:
               
chr18:14453277-14452920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
868-1311
               

               
Cow position:
               
chr18:43119976-43119533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
868-1335
               

               
Cow position:
               
chr18:43022472-43022005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
868-1360
               

               
Cow position:
               
chr18:40306852-40307344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
868-1392
               

               
Cow position:
               
chr18:56316564-56317089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
373, 392
               

               
Conread position:
               
868-1395
               

               
Cow position:
               
chr18:42674974-42674447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
868-1402
               

               
Cow position:
               
chr18:54967967-54968499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
56, 26
               

               
Conread position:
               
868-1428
               

               
Cow position:
               
chr18:42837673-42837113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
563
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 287
               

               
Conread position:
               
868-1453
               

               
Cow position:
               
chr18:14453925-14453340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
868-1455
               

               
Cow position:
               
chr18:50250930-50251513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
596
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
868-1463
               

               
Cow position:
               
chr18:41948917-41948322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
868-1463
               

               
Cow position:
               
chr18:52012096-52011498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
604
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 56
               

               
Conread position:
               
868-1527
               

               
Cow position:
               
chr18:49022657-49023316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
868-1529
               

               
Cow position:
               
chr18:42744454-42743793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 303
               

               
Conread position:
               
868-1529
               

               
Cow position:
               
chr18:44240188-44240849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
868-1541
               

               
Cow position:
               
chr18:33064423-33063750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 359
               

               
Conread position:
               
868-1542
               

               
Cow position:
               
chr18:33064255-33063581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
868-1542
               

               
Cow position:
               
chr18:42985213-42984539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
40, 47
               

               
Conread position:
               
868-1542
               

               
Cow position:
               
chr18:44240104-44240778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
33, 47
               

               
Conread position:
               
868-1543
               

               
Cow position:
               
chr18:42675142-42674467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 36
               

               
Conread position:
               
868-1543
               

               
Cow position:
               
chr18:49022239-49022912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
243, 239
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:40086419-40085753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:41197502-41198178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 140
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:41197586-41198262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 370
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:43023060-43022384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
123, 131
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:43093491-43092816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
471, 494
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:43175177-43174501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:44398344-44397668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
376, 388
               

               
Conread position:
               
868-1544
               

               
Cow position:
               
chr18:49032783-49032107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
439
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:42791143-42791823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 37
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:43093575-43092895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 303
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:50059444-50058764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
687
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 95
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:53587156-53586476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 331
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:53636033-53635353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
432
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 40
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:55523571-55524251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
454, 467
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:56128132-56128812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
868-1548
               

               
Cow position:
               
chr18:56329924-56329244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
685
               

               
Alignm identity:
               
471
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
869-1225
               

               
Cow position:
               
chr18:50281938-50282294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
195, 210
               

               
Conread position:
               
869-1311
               

               
Cow position:
               
chr18:54993504-54993944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
43, 25
               

               
Conread position:
               
869-1542
               

               
Cow position:
               
chr18:51765734-51765061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
118, 130
               

               
Conread position:
               
869-1548
               

               
Cow position:
               
chr18:53560022-53560701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
686
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 127
               

               
Conread position:
               
869-1548
               

               
Cow position:
               
chr18:55008489-55009166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
132, 62
               

               
Conread position:
               
870-1548
               

               
Cow position:
               
chr18:41949335-41948657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
871-1225
               

               
Cow position:
               
chr18:22634822-22635176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
47, 62
               

               
Conread position:
               
871-1317
               

               
Cow position:
               
chr18:42959865-42959428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
871-1394
               

               
Cow position:
               
chr18:51812534-51812011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
871-1395
               

               
Cow position:
               
chr18:22634654-22635178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
49, 37
               

               
Conread position:
               
871-1429
               

               
Cow position:
               
chr18:56493942-56494500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 124
               

               
Conread position:
               
871-1487
               

               
Cow position:
               
chr18:56247715-56247109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
41, 30
               

               
Conread position:
               
871-1539
               

               
Cow position:
               
chr18:42693950-42693282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
871-1542
               

               
Cow position:
               
chr18:51368420-51367750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
871-1542
               

               
Cow position:
               
chr18:51765900-51765229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 44
               

               
Conread position:
               
871-1543
               

               
Cow position:
               
chr18:42960285-42959622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
290, 305
               

               
Conread position:
               
871-1543
               

               
Cow position:
               
chr18:52447458-52448130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
30, 44
               

               
Conread position:
               
871-1544
               

               
Cow position:
               
chr18:52447626-52448300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 291
               

               
Conread position:
               
871-1548
               

               
Cow position:
               
chr18:53586817-53586140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
338, 328
               

               
Conread position:
               
871-1548
               

               
Cow position:
               
chr18:54966881-54967558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
688
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 53
               

               
Conread position:
               
871-1548
               

               
Cow position:
               
chr18:55523658-55524335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
458, 464
               

               
Conread position:
               
872-1239
               

               
Cow position:
               
chr18:51367580-51367213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 66
               

               
Conread position:
               
872-1317
               

               
Cow position:
               
chr18:51765395-51764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
174, 179
               

               
Conread position:
               
872-1401
               

               
Cow position:
               
chr18:51752152-51751623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
175, 181
               

               
Conread position:
               
872-1457
               

               
Cow position:
               
chr18:52428404-52428989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
114, 127
               

               
Conread position:
               
872-1457
               

               
Cow position:
               
chr18:52433585-52434170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
124, 134
               

               
Conread position:
               
872-1530
               

               
Cow position:
               
chr18:56493688-56494349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
143, 152
               

               
Conread position:
               
872-1535
               

               
Cow position:
               
chr18:52428152-52428815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
211, 204
               

               
Conread position:
               
872-1535
               

               
Cow position:
               
chr18:52433333-52433996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
211, 203
               

               
Conread position:
               
872-1536
               

               
Cow position:
               
chr18:51400547-51401211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 129
               

               
Conread position:
               
872-1542
               

               
Cow position:
               
chr18:49033283-49032613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
443
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 36
               

               
Conread position:
               
872-1542
               

               
Cow position:
               
chr18:51368503-51367833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
872-1543
               

               
Cow position:
               
chr18:52427648-52428319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
302, 288
               

               
Conread position:
               
872-1543
               

               
Cow position:
               
chr18:52432997-52433668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
675
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
302, 288
               

               
Conread position:
               
872-1544
               

               
Cow position:
               
chr18:42985461-42984789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
29, 43
               

               
Conread position:
               
872-1544
               

               
Cow position:
               
chr18:43175593-43174921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
33, 43
               

               
Conread position:
               
872-1544
               

               
Cow position:
               
chr18:55067095-55066423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
872-1548
               

               
Cow position:
               
chr18:40074873-40075546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
872-1548
               

               
Cow position:
               
chr18:55523407-55524083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
681
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
873-1164
               

               
Cow position:
               
chr18:53560530-53560817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 130
               

               
Conread position:
               
873-1371
               

               
Cow position:
               
chr18:50271645-50272143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
363, 380
               

               
Conread position:
               
873-1384
               

               
Cow position:
               
chr18:53586479-53585968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
456, 442
               

               
Conread position:
               
873-1505
               

               
Cow position:
               
chr18:56493860-56494492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
637
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 130
               

               
Conread position:
               
873-1533
               

               
Cow position:
               
chr18:53586647-53585987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
664
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
873-1539
               

               
Cow position:
               
chr18:33064586-33063920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:33064922-33064247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 43
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:53559774-53560449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 326
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:53559942-53560617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:53586731-53586056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
680
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:55018148-55018825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
36, 42
               

               
Conread position:
               
873-1548
               

               
Cow position:
               
chr18:56329583-56328908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
461
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 35
               

               
Conread position:
               
874-1132
               

               
Cow position:
               
chr18:55524081-55524339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
874-1198
               

               
Cow position:
               
chr18:56267527-56267203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
49, 34
               

               
Conread position:
               
874-1234
               

               
Cow position:
               
chr18:50246430-50246790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
300, 279
               

               
Conread position:
               
874-1336
               

               
Cow position:
               
chr18:50295373-50295835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
362, 367
               

               
Conread position:
               
874-1403
               

               
Cow position:
               
chr18:50058934-50058407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
134, 127
               

               
Conread position:
               
874-1452
               

               
Cow position:
               
chr18:42792325-42792903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
581
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
35, 42
               

               
Conread position:
               
874-1536
               

               
Cow position:
               
chr18:50281691-50282353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 106
               

               
Conread position:
               
874-1542
               

               
Cow position:
               
chr18:51400297-51400965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
424
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 197
               

               
Conread position:
               
874-1543
               

               
Cow position:
               
chr18:53498154-53498826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
423
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 131
               

               
Conread position:
               
874-1547
               

               
Cow position:
               
chr18:42693611-42692938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
517, 371
               

               
Conread position:
               
874-1548
               

               
Cow position:
               
chr18:53559691-53560365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
416
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 114
               

               
Conread position:
               
875-1389
               

               
Cow position:
               
chr18:56434147-56434661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
171, 200
               

               
Conread position:
               
875-1394
               

               
Cow position:
               
chr18:51789287-51788768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
34, 40
               

               
Conread position:
               
875-1487
               

               
Cow position:
               
chr18:42675303-42674691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 133
               

               
Conread position:
               
875-1497
               

               
Cow position:
               
chr18:50022385-50021760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
43, 49
               

               
Conread position:
               
875-1526
               

               
Cow position:
               
chr18:43167894-43168545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 40
               

               
Conread position:
               
875-1526
               

               
Cow position:
               
chr18:50246179-50246830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
654
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 140
               

               
Conread position:
               
875-1536
               

               
Cow position:
               
chr18:42792242-42792903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
413
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
565, 558
               

               
Conread position:
               
875-1538
               

               
Cow position:
               
chr18:53525794-53526455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
875-1540
               

               
Cow position:
               
chr18:56316403-56317068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
430
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
875-1543
               

               
Cow position:
               
chr18:52447294-52447962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:40306271-40306940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 47
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:41949078-41948409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 40
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:42744699-42744030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 41
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:43022969-43022300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 211
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:43093652-43092983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 120
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:44239859-44240528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 217
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:50083552-50084221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
479, 475
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:50848605-50849274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
875-1544
               

               
Cow position:
               
chr18:53586981-53586312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
671
               

               
Alignm identity:
               
427
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
453, 463
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:50059605-50058932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 274
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:50083300-50083973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 105
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:50083384-50084057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 21
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:50099413-50100086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
364, 376
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:50246011-50246684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
676
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 99
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:53509340-53510011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:53610449-53609776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:54967053-54967723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
28, 52
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:54979494-54980167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
410
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
333, 324
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:55017814-55018487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
126, 132
               

               
Conread position:
               
875-1548
               

               
Cow position:
               
chr18:56316151-56316824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
678
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 15
               

               
Conread position:
               
878-1485
               

               
Cow position:
               
chr18:51765557-51764950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
135, 140
               

               
Conread position:
               
881-1202
               

               
Cow position:
               
chr18:56267436-56267115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
881-1383
               

               
Cow position:
               
chr18:55523836-55524338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
188, 203
               

               
Conread position:
               
881-1486
               

               
Cow position:
               
chr18:50099671-50100276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
103, 110
               

               
Conread position:
               
881-1526
               

               
Cow position:
               
chr18:56316325-56316970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
649
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 23
               

               
Conread position:
               
881-1536
               

               
Cow position:
               
chr18:50295212-50295867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
132, 158
               

               
Conread position:
               
881-1537
               

               
Cow position:
               
chr18:14453996-14453340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
659
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
27, 34
               

               
Conread position:
               
881-1539
               

               
Cow position:
               
chr18:50271485-50272143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
881-1544
               

               
Cow position:
               
chr18:40086828-40086165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
674
               

               
Alignm identity:
               
404
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
881-1544
               

               
Cow position:
               
chr18:43022711-43022048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
198, 189
               

               
Conread position:
               
881-1544
               

               
Cow position:
               
chr18:44239781-44240444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
398
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
279, 293
               

               
Conread position:
               
881-1548
               

               
Cow position:
               
chr18:50246101-50246768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 127
               

               
Conread position:
               
881-1548
               

               
Cow position:
               
chr18:53559866-53560533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
672
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 13
               

               
Conread position:
               
882-1485
               

               
Cow position:
               
chr18:43120130-43119527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
119, 126
               

               
Conread position:
               
882-1548
               

               
Cow position:
               
chr18:42790905-42791571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
403
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
370, 361
               

               
Conread position:
               
883-1458
               

               
Cow position:
               
chr18:56434323-56434896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
11, 36
               

               
Conread position:
               
883-1497
               

               
Cow position:
               
chr18:50048945-50048331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
119, 125
               

               
Conread position:
               
883-1542
               

               
Cow position:
               
chr18:53498079-53498741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
670
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 51
               

               
Conread position:
               
883-1544
               

               
Cow position:
               
chr18:42837910-42837249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
666
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
884-1199
               

               
Cow position:
               
chr18:50030704-50030392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
99, 281
               

               
Conread position:
               
884-1543
               

               
Cow position:
               
chr18:52447387-52448046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
292, 278
               

               
Conread position:
               
884-1548
               

               
Cow position:
               
chr18:50049112-50048448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
669
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
290, 271
               

               
Conread position:
               
888-1392
               

               
Cow position:
               
chr18:53498507-53499012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
888-1544
               

               
Cow position:
               
chr18:56247783-56247136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
660
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 164
               

               
Conread position:
               
889-1541
               

               
Cow position:
               
chr18:54979340-54979991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
658
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
889-1548
               

               
Cow position:
               
chr18:54992600-54993259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
667
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 42
               

               
Conread position:
               
890-1548
               

               
Cow position:
               
chr18:50848119-50848774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
662
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
181, 40
               

               
Conread position:
               
899-1544
               

               
Cow position:
               
chr18:42985602-42984957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 182
               

               
Conread position:
               
909-1548
               

               
Cow position:
               
chr18:49022614-49023253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
163, 169
               

               
Conread position:
               
913-1544
               

               
Cow position:
               
chr18:44184914-44184283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
633
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
412, 430
               

               
Conread position:
               
913-1544
               

               
Cow position:
               
chr18:44239729-44240360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
639
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
73, 85
               

               
Conread position:
               
914-1464
               

               
Cow position:
               
chr18:43120014-43119464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
555
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
94, 88
               

               
Conread position:
               
914-1535
               

               
Cow position:
               
chr18:44184577-44183956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 94
               

               
Conread position:
               
914-1542
               

               
Cow position:
               
chr18:42675180-42674552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
247, 262
               

               
Conread position:
               
914-1543
               

               
Cow position:
               
chr18:52012468-52011841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
630
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
914-1544
               

               
Cow position:
               
chr18:43022762-43022132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
76, 85
               

               
Conread position:
               
914-1544
               

               
Cow position:
               
chr18:50048998-50048368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
635
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
916-1544
               

               
Cow position:
               
chr18:33093047-33092419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
394, 419
               

               
Conread position:
               
919-1544
               

               
Cow position:
               
chr18:50031088-50030461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
293, 151
               

               
Conread position:
               
921-1375
               

               
Cow position:
               
chr18:42827468-42827922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
286, 291
               

               
Conread position:
               
921-1548
               

               
Cow position:
               
chr18:42724608-42723981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
632
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 81
               

               
Conread position:
               
922-1542
               

               
Cow position:
               
chr18:49032813-49032193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 45
               

               
Conread position:
               
922-1542
               

               
Cow position:
               
chr18:52012378-52011758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 320
               

               
Conread position:
               
922-1544
               

               
Cow position:
               
chr18:52012210-52011588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 78
               

               
Conread position:
               
922-1548
               

               
Cow position:
               
chr18:33064453-33063827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
387
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
922-1548
               

               
Cow position:
               
chr18:56329954-56329328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 241
               

               
Conread position:
               
923-1456
               

               
Cow position:
               
chr18:44154217-44153691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
234, 248
               

               
Conread position:
               
923-1486
               

               
Cow position:
               
chr18:50059137-50058574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
349, 345
               

               
Conread position:
               
923-1493
               

               
Cow position:
               
chr18:43022585-43022014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
74, 63
               

               
Conread position:
               
923-1529
               

               
Cow position:
               
chr18:42985074-42984468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
566, 573
               

               
Conread position:
               
923-1541
               

               
Cow position:
               
chr18:1417984-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
192, 185
               

               
Conread position:
               
923-1542
               

               
Cow position:
               
chr18:33064620-33064001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 232
               

               
Conread position:
               
923-1542
               

               
Cow position:
               
chr18:50099125-50099744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
231, 241
               

               
Conread position:
               
923-1544
               

               
Cow position:
               
chr18:42791114-42791735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
923-1544
               

               
Cow position:
               
chr18:42837954-42837333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
253, 247
               

               
Conread position:
               
923-1544
               

               
Cow position:
               
chr18:43120173-43119552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
329, 317
               

               
Conread position:
               
923-1544
               

               
Cow position:
               
chr18:44184736-44184115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
245, 235
               

               
Conread position:
               
923-1548
               

               
Cow position:
               
chr18:33064788-33064163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
628
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 152
               

               
Conread position:
               
923-1548
               

               
Cow position:
               
chr18:42792122-42792747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
394
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
313, 328
               

               
Conread position:
               
924-1544
               

               
Cow position:
               
chr18:41197980-41198598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
72, 9
               

               
Conread position:
               
926-1548
               

               
Cow position:
               
chr18:33065037-33064415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
926-1548
               

               
Cow position:
               
chr18:44154383-44153767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
927-1548
               

               
Cow position:
               
chr18:42694062-42693441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 141
               

               
Conread position:
               
928-1544
               

               
Cow position:
               
chr18:43120337-43119720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
620
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
6, 71
               

               
Conread position:
               
928-1548
               

               
Cow position:
               
chr18:55017784-55018403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
627
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
78, 5
               

               
Conread position:
               
929-1548
               

               
Cow position:
               
chr18:42792212-42792831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
474, 493
               

               
Conread position:
               
930-1548
               

               
Cow position:
               
chr18:53509227-53509845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
623
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
930-1548
               

               
Cow position:
               
chr18:53525681-53526299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
625
               

               
Alignm identity:
               
383
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
931-1548
               

               
Cow position:
               
chr18:42693974-42693357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 225
               

               
Conread position:
               
931-1548
               

               
Cow position:
               
chr18:56329693-56329076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
576, 581
               

               
Conread position:
               
931-1548
               

               
Cow position:
               
chr18:56330029-56329412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
326, 316
               

               
Conread position:
               
932-1317
               

               
Cow position:
               
chr18:44253816-44253431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
295, 304
               

               
Conread position:
               
932-1419
               

               
Cow position:
               
chr18:14454029-14453542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
275, 279
               

               
Conread position:
               
932-1419
               

               
Cow position:
               
chr18:42724429-42723942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
151, 137
               

               
Conread position:
               
932-1487
               

               
Cow position:
               
chr18:42960308-42959753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
458, 480
               

               
Conread position:
               
932-1542
               

               
Cow position:
               
chr18:51400439-51401049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
932-1543
               

               
Cow position:
               
chr18:44154292-44153688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
231, 243
               

               
Conread position:
               
932-1543
               

               
Cow position:
               
chr18:50848830-50849441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
498, 504
               

               
Conread position:
               
932-1543
               

               
Cow position:
               
chr18:52447015-52447626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 242
               

               
Conread position:
               
932-1544
               

               
Cow position:
               
chr18:42675330-42674718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
617
               

               
Alignm identity:
               
382
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 322
               

               
Conread position:
               
932-1544
               

               
Cow position:
               
chr18:42744726-42744114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 238
               

               
Conread position:
               
932-1544
               

               
Cow position:
               
chr18:43023080-43022468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
312, 325
               

               
Conread position:
               
932-1547
               

               
Cow position:
               
chr18:52012116-52011498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
406
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 305
               

               
Conread position:
               
932-1548
               

               
Cow position:
               
chr18:33064275-33063659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 306
               

               
Conread position:
               
932-1548
               

               
Cow position:
               
chr18:52012284-52011668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
411
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 310
               

               
Conread position:
               
933-1455
               

               
Cow position:
               
chr18:56434121-56434643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
66, 62
               

               
Conread position:
               
933-1543
               

               
Cow position:
               
chr18:41949104-41948494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 242
               

               
Conread position:
               
933-1543
               

               
Cow position:
               
chr18:52447268-52447878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
308, 323
               

               
Conread position:
               
933-1548
               

               
Cow position:
               
chr18:54967780-54968393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
275, 251
               

               
Conread position:
               
933-1548
               

               
Cow position:
               
chr18:54992896-54993511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
234, 243
               

               
Conread position:
               
934-1319
               

               
Cow position:
               
chr18:14453295-14452910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
934-1521
               

               
Cow position:
               
chr18:50083695-50084282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 326
               

               
Conread position:
               
934-1536
               

               
Cow position:
               
chr18:55523301-55523903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
934-1544
               

               
Cow position:
               
chr18:42791545-42792155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
613
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
69, 74
               

               
Conread position:
               
935-1371
               

               
Cow position:
               
chr18:56391269-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
148, 134
               

               
Conread position:
               
935-1538
               

               
Cow position:
               
chr18:42724510-42723907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
612
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
74, 66
               

               
Conread position:
               
935-1539
               

               
Cow position:
               
chr18:51400526-51401130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 325
               

               
Conread position:
               
935-1542
               

               
Cow position:
               
chr18:50059461-50058854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
611
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 130
               

               
Conread position:
               
935-1548
               

               
Cow position:
               
chr18:42693802-42693190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
619
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
73, 66
               

               
Conread position:
               
935-1548
               

               
Cow position:
               
chr18:55067116-55066503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
935-1548
               

               
Cow position:
               
chr18:56330109-56329496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
614
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
939-1452
               

               
Cow position:
               
chr18:42827402-42827915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
939-1544
               

               
Cow position:
               
chr18:33065108-33064503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
939-1544
               

               
Cow position:
               
chr18:41949350-41948745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 405
               

               
Conread position:
               
939-1548
               

               
Cow position:
               
chr18:56316047-56316656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
615
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
234, 223
               

               
Conread position:
               
940-1543
               

               
Cow position:
               
chr18:52432897-52433500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
304, 316
               

               
Conread position:
               
941-1485
               

               
Cow position:
               
chr18:51400280-51400824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 67
               

               
Conread position:
               
941-1548
               

               
Cow position:
               
chr18:56315965-56316572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
608
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
942-1536
               

               
Cow position:
               
chr18:51752334-51751740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
946-1384
               

               
Cow position:
               
chr18:1418175-1418613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
322, 301
               

               
Conread position:
               
946-1542
               

               
Cow position:
               
chr18:50281679-50282275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 59
               

               
Conread position:
               
946-1543
               

               
Cow position:
               
chr18:50271466-50272063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 98
               

               
Conread position:
               
946-1544
               

               
Cow position:
               
chr18:33093101-33092503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
54, 62
               

               
Conread position:
               
946-1544
               

               
Cow position:
               
chr18:43175267-43174669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
601
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 229
               

               
Conread position:
               
946-1548
               

               
Cow position:
               
chr18:56330182-56329580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
391
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
947-1539
               

               
Cow position:
               
chr18:51368597-51368004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 289
               

               
Conread position:
               
947-1548
               

               
Cow position:
               
chr18:50083288-50083889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 304
               

               
Conread position:
               
947-1548
               

               
Cow position:
               
chr18:50098982-50099582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
206, 7
               

               
Conread position:
               
947-1548
               

               
Cow position:
               
chr18:50246000-50246600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
607
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
949-1544
               

               
Cow position:
               
chr18:53497980-53498575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
96, 36
               

               
Conread position:
               
950-1544
               

               
Cow position:
               
chr18:56247806-56247218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 293
               

               
Conread position:
               
952-1548
               

               
Cow position:
               
chr18:56493684-56494283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
34, 54
               

               
Conread position:
               
953-1548
               

               
Cow position:
               
chr18:50848515-50849110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 262
               

               
Conread position:
               
954-1548
               

               
Cow position:
               
chr18:50295201-50295795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
957-1542
               

               
Cow position:
               
chr18:51839545-51838960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 10
               

               
Conread position:
               
958-1544
               

               
Cow position:
               
chr18:50022386-50021797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
594
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
111, 123
               

               
Conread position:
               
959-1368
               

               
Cow position:
               
chr18:56267526-56267117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 42
               

               
Conread position:
               
959-1539
               

               
Cow position:
               
chr18:56391413-56390833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 301
               

               
Conread position:
               
959-1541
               

               
Cow position:
               
chr18:55497688-55497106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 371
               

               
Conread position:
               
961-1548
               

               
Cow position:
               
chr18:42694112-42693525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 107
               

               
Conread position:
               
966-1548
               

               
Cow position:
               
chr18:42694191-42693609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
262, 272
               

               
Conread position:
               
967-1277
               

               
Cow position:
               
chr18:56391960-56391650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
980-1401
               

               
Cow position:
               
chr18:51367640-51367219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
349, 339
               

               
Conread position:
               
986-1548
               

               
Cow position:
               
chr18:50245957-50246516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
566
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
256, 31
               

               
Conread position:
               
996-1542
               

               
Cow position:
               
chr18:22843975-22843420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
73, 80
               

               
Conread position:
               
998-1541
               

               
Cow position:
               
chr18:56391458-56390915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
254, 246
               

               
Conread position:
               
998-1542
               

               
Cow position:
               
chr18:56391542-56390998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 335
               

               
Conread position:
               
1004-1544
               

               
Cow position:
               
chr18:55008456-55008993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
221, 94
               

               
Conread position:
               
1004-1548
               

               
Cow position:
               
chr18:52012462-52011920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
400, 16
               

               
Conread position:
               
1006-1548
               

               
Cow position:
               
chr18:43167773-43168315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 9
               

               
Conread position:
               
1016-1401
               

               
Cow position:
               
chr18:43048737-43048352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
236, 226
               

               
Conread position:
               
1016-1548
               

               
Cow position:
               
chr18:1417993-1418525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 243
               

               
Conread position:
               
1016-1548
               

               
Cow position:
               
chr18:42675330-42674798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 239
               

               
Conread position:
               
1017-1543
               

               
Cow position:
               
chr18:42827397-42827922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
321, 6
               

               
Conread position:
               
1019-1543
               

               
Cow position:
               
chr18:43167618-43168142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
96, 89
               

               
Conread position:
               
1019-1548
               

               
Cow position:
               
chr18:53509232-53509761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 180
               

               
Conread position:
               
1020-1548
               

               
Cow position:
               
chr18:42744722-42744194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1022-1542
               

               
Cow position:
               
chr18:42960302-42959782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 52
               

               
Conread position:
               
1022-1544
               

               
Cow position:
               
chr18:41949351-41948829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
408, 414
               

               
Conread position:
               
1023-1524
               

               
Cow position:
               
chr18:14454022-14453521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
269, 273
               

               
Conread position:
               
1023-1548
               

               
Cow position:
               
chr18:49022227-49022749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
307, 7
               

               
Conread position:
               
1028-1544
               

               
Cow position:
               
chr18:50271464-50271980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
146, 136
               

               
Conread position:
               
1028-1548
               

               
Cow position:
               
chr18:56330184-56329664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
403, 409
               

               
Conread position:
               
1029-1544
               

               
Cow position:
               
chr18:50281678-50282193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
127, 147
               

               
Conread position:
               
1030-1542
               

               
Cow position:
               
chr18:47846596-47846084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 38
               

               
Conread position:
               
1030-1548
               

               
Cow position:
               
chr18:50031061-50030541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
236, 127
               

               
Conread position:
               
1034-1543
               

               
Cow position:
               
chr18:41197500-41198009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1034-1544
               

               
Cow position:
               
chr18:53610542-53610032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
1036-1542
               

               
Cow position:
               
chr18:55497695-55497189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1037-1543
               

               
Cow position:
               
chr18:53559686-53560192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
175, 162
               

               
Conread position:
               
1041-1548
               

               
Cow position:
               
chr18:50848183-50848690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
87, 77
               

               
Conread position:
               
1042-1422
               

               
Cow position:
               
chr18:56267527-56267147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
218, 185
               

               
Conread position:
               
1049-1541
               

               
Cow position:
               
chr18:42675381-42674889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 116
               

               
Conread position:
               
1052-1544
               

               
Cow position:
               
chr18:1417945-1418437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1052-1548
               

               
Cow position:
               
chr18:42837909-42837413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
123, 111
               

               
Conread position:
               
1058-1544
               

               
Cow position:
               
chr18:50059674-50059188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
333, 342
               

               
Conread position:
               
1061-1544
               

               
Cow position:
               
chr18:40324929-40324449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
357, 50
               

               
Conread position:
               
1065-1548
               

               
Cow position:
               
chr18:50281630-50282113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 49
               

               
Conread position:
               
1082-1548
               

               
Cow position:
               
chr18:41949375-41948909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
273, 268
               

               
Conread position:
               
1096-1536
               

               
Cow position:
               
chr18:56267557-56267117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
21, 16
               

               
Conread position:
               
1100-1488
               

               
Cow position:
               
chr18:43048737-43048349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
229, 215
               

               
Conread position:
               
1100-1548
               

               
Cow position:
               
chr18:22634631-22635079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 99
               

               
Conread position:
               
1111-1542
               

               
Cow position:
               
chr18:56330185-56329754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 23
               

               
Conread position:
               
1112-1548
               

               
Cow position:
               
chr18:50250922-50251354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
1114-1548
               

               
Cow position:
               
chr18:33093101-33092667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
385, 393
               

               
Conread position:
               
1121-1548
               

               
Cow position:
               
chr18:55497694-55497267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1121-1548
               

               
Cow position:
               
chr18:55523320-55523747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
230, 235
               

               
Conread position:
               
1126-1542
               

               
Cow position:
               
chr18:56391582-56391166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 39
               

               
Conread position:
               
1132-1544
               

               
Cow position:
               
chr18:42675382-42674970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
1173-1548
               

               
Cow position:
               
chr18:41949368-41948993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
79, 69
               

               
Conread position:
               
1175-1548
               

               
Cow position:
               
chr18:1417984-1418357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 24
               

               
Conread position:
               
1187-1548
               

               
Cow position:
               
chr18:53610473-53610112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1193-1544
               

               
Cow position:
               
chr18:14453288-14452937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
312, 318
               

               
Conread position:
               
1203-1544
               

               
Cow position:
               
chr18:41197501-41197842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1210-1542
               

               
Cow position:
               
chr18:56267527-56267195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
1220-1525
               

               
Cow position:
               
chr18:56391959-56391654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
190, 184
               

               
Conread position:
               
1245-1518
               

               
Cow position:
               
chr18:22843549-22843277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
249, 266
               

               
Conread position:
               
1255-1544
               

               
Cow position:
               
chr18:42675343-42675054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
88, 84
               

               
Conread position:
               
1271-1544
               

               
Cow position:
               
chr18:43048734-43048461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
58, 51
               

               
Conread position:
               
1280-1548
               

               
Cow position:
               
chr18:42827407-42827675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
227, 231
               

               
Conread position:
               
1281-1543
               

               
Cow position:
               
chr18:14454016-14453754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
1301-1548
               

               
Cow position:
               
chr18:53610527-53610280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 33
               

               
Conread position:
               
1303-1541
               

               
Cow position:
               
chr18:56391960-56391722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
22, 30
               

               
Conread position:
               
1331-1542
               

               
Cow position:
               
chr18:56267490-56267279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
77, 73
               

               
Conread position:
               
1378-1548
               

               
Cow position:
               
chr18:56267527-56267357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.