Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 840-1547 |
| Cow position: | chr2:86465499-86466206 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 84 |
| Conread position: | 847-1530 |
| Cow position: | chr2:86465590-86466271 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 417 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 856-1536 |
| Cow position: | chr2:78754997-78755673 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 397 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 380, 336 |
| Conread position: | 859-1529 |
| Cow position: | chr2:82799778-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 159 |
| Conread position: | 860-1544 |
| Cow position: | chr2:78754917-78755599 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 411 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 147, 141 |
| Conread position: | 868-1548 |
| Cow position: | chr2:82799535-82800215 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 868-1548 |
| Cow position: | chr2:82799619-82800299 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 869-1548 |
| Cow position: | chr2:5875088-5874409 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 872-1544 |
| Cow position: | chr2:82799707-82800379 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 52 |
| Conread position: | 872-1548 |
| Cow position: | chr2:86465363-86466039 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 391 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 364, 399 |
| Conread position: | 875-1539 |
| Cow position: | chr2:78754848-78755511 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 392 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 280, 286 |
| Conread position: | 881-1392 |
| Cow position: | chr2:5874656-5874145 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 884-1548 |
| Cow position: | chr2:5874905-5874241 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 396 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 24, 40 |
| Conread position: | 914-1544 |
| Cow position: | chr2:82799497-82800127 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 329 |
| Conread position: | 922-1548 |
| Cow position: | chr2:86465497-86466123 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 206 |
| Conread position: | 923-1548 |
| Cow position: | chr2:86465078-86465703 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 366 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 925-1544 |
| Cow position: | chr2:78754816-78755432 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 8 |
| Conread position: | 931-1547 |
| Cow position: | chr2:5874942-5874326 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 165 |
| Conread position: | 931-1548 |
| Cow position: | chr2:5875110-5874493 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 204 |
| Conread position: | 935-1458 |
| Cow position: | chr2:78755495-78756014 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 306 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 270, 18 |
| Conread position: | 935-1548 |
| Cow position: | chr2:5874770-5874157 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 378 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 946-1548 |
| Cow position: | chr2:5875179-5874577 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 123 |
| Conread position: | 946-1548 |
| Cow position: | chr2:86465269-86465871 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 401, 367 |
| Conread position: | 947-1423 |
| Cow position: | chr2:48689537-48689062 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 304, 122 |
| Conread position: | 1019-1548 |
| Cow position: | chr2:86465006-86465535 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 335 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 157, 136 |
| Conread position: | 1029-1548 |
| Cow position: | chr2:5875180-5874661 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1052-1542 |
| Cow position: | chr2:82799467-82799957 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 199, 175 |
| Conread position: | 1136-1544 |
| Cow position: | chr2:82799467-82799875 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 172, 190 |
| Conread position: | 1185-1542 |
| Cow position: | chr2:48689553-48689195 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 1255-1548 |
| Cow position: | chr2:82799502-82799795 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 142 |
| Conread position: | 1295-1539 |
| Cow position: | chr2:82799458-82799702 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 184, 199 |
Show alignments to all cow chromosomes.