Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 847-1200 |
| Cow position: | chr21:12659660-12660013 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 848-1542 |
| Cow position: | chr21:12659241-12659935 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 850-1368 |
| Cow position: | chr21:34223061-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 319 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 485, 470 |
| Conread position: | 862-1548 |
| Cow position: | chr21:12658920-12659605 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 6 |
| Conread position: | 868-1357 |
| Cow position: | chr21:12608417-12607928 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 868-1543 |
| Cow position: | chr21:12608837-12608162 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 873-1541 |
| Cow position: | chr21:12608664-12607996 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 931-1263 |
| Cow position: | chr21:12659660-12659992 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 931-1542 |
| Cow position: | chr21:12659072-12659683 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 935-1409 |
| Cow position: | chr21:12608434-12607960 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 935-1538 |
| Cow position: | chr21:12659412-12660015 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 88 |
| Conread position: | 935-1542 |
| Cow position: | chr21:12658908-12659515 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 597, 592 |
| Conread position: | 935-1542 |
| Cow position: | chr21:12659160-12659767 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 325 |
| Conread position: | 935-1543 |
| Cow position: | chr21:12608686-12608078 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 309 |
| Conread position: | 939-1542 |
| Cow position: | chr21:12658827-12659431 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 947-1452 |
| Cow position: | chr21:34223048-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 317 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 312, 284 |
| Conread position: | 964-1541 |
| Cow position: | chr21:12608909-12608332 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 132 |
| Conread position: | 1023-1542 |
| Cow position: | chr21:12658827-12659347 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 401 |
| Conread position: | 1025-1548 |
| Cow position: | chr21:34223135-34222615 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 71, 80 |
| Conread position: | 1042-1541 |
| Cow position: | chr21:12608915-12608416 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1049-1536 |
| Cow position: | chr21:34223030-34222543 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 1082-1548 |
| Cow position: | chr21:12658803-12659269 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1139-1548 |
| Cow position: | chr21:12608901-12608493 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 279, 16 |
| Conread position: | 1270-1548 |
| Cow position: | chr21:12608855-12608577 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 84, 78 |
Show alignments to all cow chromosomes.