Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 245-378 |
| Cow position: | chr22:14439807-14439940 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 245-378 |
| Cow position: | chr22:14465233-14465366 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 844-1452 |
| Cow position: | chr22:46654250-46654859 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 365 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 41 |
| Conread position: | 847-1533 |
| Cow position: | chr22:12385596-12384908 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 847-1543 |
| Cow position: | chr22:12432424-12431728 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 395 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 848-1372 |
| Cow position: | chr22:11640931-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 239 |
| Conread position: | 848-1457 |
| Cow position: | chr22:12475896-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 848-1544 |
| Cow position: | chr22:12432003-12431307 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 848-1544 |
| Cow position: | chr22:12476232-12475536 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 848-1544 |
| Cow position: | chr22:12499027-12499723 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 848-1548 |
| Cow position: | chr22:12458535-12457835 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 395 |
| Conread position: | 849-1487 |
| Cow position: | chr22:12432086-12431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 849-1543 |
| Cow position: | chr22:12476147-12475453 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 502 |
| Conread position: | 849-1544 |
| Cow position: | chr22:12431666-12430971 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 859-1300 |
| Cow position: | chr22:11666531-11666971 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 859-1373 |
| Cow position: | chr22:12499457-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 859-1529 |
| Cow position: | chr22:12399424-12398754 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 494, 490 |
| Conread position: | 859-1544 |
| Cow position: | chr22:12432161-12431475 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 492 |
| Conread position: | 860-1543 |
| Cow position: | chr22:12431571-12430888 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 860-1544 |
| Cow position: | chr22:12498873-12499555 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 18 |
| Conread position: | 860-1544 |
| Cow position: | chr22:14429815-14430499 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 412 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 159, 136 |
| Conread position: | 860-1548 |
| Cow position: | chr22:12385668-12384977 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 426 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 861-1465 |
| Cow position: | chr22:12419024-12418422 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 7 |
| Conread position: | 862-1543 |
| Cow position: | chr22:12399590-12398908 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 862-1544 |
| Cow position: | chr22:12476385-12475704 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 637, 5 |
| Conread position: | 863-1536 |
| Cow position: | chr22:14467979-14468652 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 412 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 304, 294 |
| Conread position: | 867-1320 |
| Cow position: | chr22:11666455-11666908 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 286 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 135, 126 |
| Conread position: | 867-1453 |
| Cow position: | chr22:11701109-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 126 |
| Conread position: | 871-1543 |
| Cow position: | chr22:12499134-12499806 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 289 |
| Conread position: | 871-1544 |
| Cow position: | chr22:12431728-12431055 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 872-1541 |
| Cow position: | chr22:12475956-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 872-1541 |
| Cow position: | chr22:12499303-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 872-1548 |
| Cow position: | chr22:11640703-11641379 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 873-1389 |
| Cow position: | chr22:12431222-12430706 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 453, 437 |
| Conread position: | 874-1536 |
| Cow position: | chr22:12458425-12457763 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 874-1543 |
| Cow position: | chr22:12458593-12457924 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 875-1201 |
| Cow position: | chr22:12458088-12457762 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 875-1456 |
| Cow position: | chr22:11640874-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 450, 458 |
| Conread position: | 875-1487 |
| Cow position: | chr22:11640790-11641402 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 30 |
| Conread position: | 875-1544 |
| Cow position: | chr22:12476037-12475368 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 296 |
| Conread position: | 875-1548 |
| Cow position: | chr22:12399492-12398819 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 881-1542 |
| Cow position: | chr22:12399822-12399161 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 884-1544 |
| Cow position: | chr22:46654122-46654782 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 383 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 124, 117 |
| Conread position: | 884-1548 |
| Cow position: | chr22:46654038-46654702 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 408 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 912-1543 |
| Cow position: | chr22:12399707-12399076 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 141 |
| Conread position: | 919-1548 |
| Cow position: | chr22:46653989-46654618 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 364 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 415, 400 |
| Conread position: | 920-1544 |
| Cow position: | chr22:14467952-14468576 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 374 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 921-1542 |
| Cow position: | chr22:14429792-14430413 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 87, 82 |
| Conread position: | 921-1542 |
| Cow position: | chr22:14430212-14430833 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 375 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 87, 68 |
| Conread position: | 922-1544 |
| Cow position: | chr22:11640669-11641291 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 321 |
| Conread position: | 924-1542 |
| Cow position: | chr22:12458627-12458009 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 924-1548 |
| Cow position: | chr22:12419315-12418674 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 437 |
| Conread position: | 931-1536 |
| Cow position: | chr22:46654253-46654859 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 356 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 151, 142 |
| Conread position: | 931-1544 |
| Cow position: | chr22:12432424-12431811 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 359 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 499, 507 |
| Conread position: | 932-1548 |
| Cow position: | chr22:12431331-12430715 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 304 |
| Conread position: | 933-1544 |
| Cow position: | chr22:12499280-12499891 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 238 |
| Conread position: | 935-1544 |
| Cow position: | chr22:12432168-12431559 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1462 |
| Cow position: | chr22:11666444-11666966 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 145, 129 |
| Conread position: | 945-1488 |
| Cow position: | chr22:11701103-11701646 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 212 |
| Conread position: | 946-1543 |
| Cow position: | chr22:12432493-12431896 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 311, 290 |
| Conread position: | 947-1373 |
| Cow position: | chr22:14442300-14442723 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 174, 194 |
| Conread position: | 947-1542 |
| Cow position: | chr22:14429650-14430245 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 183, 190 |
| Conread position: | 953-1535 |
| Cow position: | chr22:12419017-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 964-1543 |
| Cow position: | chr22:12399823-12399244 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 363 |
| Conread position: | 965-1543 |
| Cow position: | chr22:12399900-12399328 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 211, 61 |
| Conread position: | 993-1543 |
| Cow position: | chr22:11640656-11641206 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 518 |
| Conread position: | 1010-1541 |
| Cow position: | chr22:14442192-14442723 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 10, 92 |
| Conread position: | 1024-1544 |
| Cow position: | chr22:14441957-14442477 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 234, 214 |
| Conread position: | 1036-1488 |
| Cow position: | chr22:11666456-11666908 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 275, 282 |
| Conread position: | 1036-1548 |
| Cow position: | chr22:11701110-11701622 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 397 |
| Conread position: | 1036-1548 |
| Cow position: | chr22:12419018-12418506 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 369, 374 |
| Conread position: | 1049-1542 |
| Cow position: | chr22:11640628-11641121 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 1049-1548 |
| Cow position: | chr22:12498892-12499391 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 304 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1107-1548 |
| Cow position: | chr22:11666443-11666884 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 152, 137 |
| Conread position: | 1108-1543 |
| Cow position: | chr22:14441957-14442392 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1131-1542 |
| Cow position: | chr22:11640626-11641037 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 179, 186 |
| Conread position: | 1131-1548 |
| Cow position: | chr22:12399902-12399491 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 337, 63 |
| Conread position: | 1158-1548 |
| Cow position: | chr22:14467937-14468328 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 5, 279 |
| Conread position: | 1173-1542 |
| Cow position: | chr22:12458630-12458261 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1198-1543 |
| Cow position: | chr22:11701104-11701449 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 160, 117 |
| Conread position: | 1258-1543 |
| Cow position: | chr22:12476410-12476125 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1259-1548 |
| Cow position: | chr22:11640670-11640959 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1281-1544 |
| Cow position: | chr22:12458606-12458343 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 44 |
Show alignments to all cow chromosomes.