Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 845-1542 |
| Cow position: | chr23:25626184-25626878 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 847-1164 |
| Cow position: | chr23:25660391-25660708 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 847-1368 |
| Cow position: | chr23:25626522-25627038 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 508, 61 |
| Conread position: | 847-1472 |
| Cow position: | chr23:24639456-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 848-1203 |
| Cow position: | chr23:24560481-24560126 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 848-1344 |
| Cow position: | chr23:25660224-25660720 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 160, 146 |
| Conread position: | 848-1452 |
| Cow position: | chr23:24560733-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 855-1491 |
| Cow position: | chr23:24536048-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 378 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 856-1428 |
| Cow position: | chr23:25698658-25698087 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 856-1528 |
| Cow position: | chr23:24547333-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 858-1487 |
| Cow position: | chr23:24522816-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 383, 29 |
| Conread position: | 860-1224 |
| Cow position: | chr23:24626309-24626673 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 55 |
| Conread position: | 868-1182 |
| Cow position: | chr23:25698395-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 87 |
| Conread position: | 868-1219 |
| Cow position: | chr23:24626401-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 295, 306 |
| Conread position: | 868-1240 |
| Cow position: | chr23:25660328-25660700 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 871-1369 |
| Cow position: | chr23:24535949-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 44 |
| Conread position: | 871-1543 |
| Cow position: | chr23:24560878-24560206 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 872-1445 |
| Cow position: | chr23:25660164-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 198 |
| Conread position: | 872-1548 |
| Cow position: | chr23:24639229-24639905 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 873-1405 |
| Cow position: | chr23:24522719-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 317 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 873-1541 |
| Cow position: | chr23:24639398-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 542, 563 |
| Conread position: | 874-1544 |
| Cow position: | chr23:24639315-24639985 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 125 |
| Conread position: | 875-1543 |
| Cow position: | chr23:25626298-25626963 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 913-1497 |
| Cow position: | chr23:25698686-25698102 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 352 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 341, 327 |
| Conread position: | 913-1542 |
| Cow position: | chr23:25626000-25626626 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 433, 441 |
| Conread position: | 923-1203 |
| Cow position: | chr23:25626763-25627043 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 190, 221 |
| Conread position: | 932-1224 |
| Cow position: | chr23:25724054-25723762 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 933-1189 |
| Cow position: | chr23:25723969-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 939-1335 |
| Cow position: | chr23:24626304-24626700 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 952-1548 |
| Cow position: | chr23:24547321-24546725 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 119 |
| Conread position: | 954-1543 |
| Cow position: | chr23:24560879-24560290 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 959-1529 |
| Cow position: | chr23:25660167-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 279 |
| Conread position: | 959-1537 |
| Cow position: | chr23:24536029-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 350 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 133 |
| Conread position: | 965-1357 |
| Cow position: | chr23:25724105-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 118, 104 |
| Conread position: | 1021-1459 |
| Cow position: | chr23:24626302-24626740 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 217 |
| Conread position: | 1021-1548 |
| Cow position: | chr23:25660145-25660672 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 241 |
| Conread position: | 1028-1542 |
| Cow position: | chr23:24639217-24639731 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 1031-1401 |
| Cow position: | chr23:25724123-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1038-1542 |
| Cow position: | chr23:24536034-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 299 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1049-1318 |
| Cow position: | chr23:24654055-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1105-1536 |
| Cow position: | chr23:24626302-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 275 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 147, 139 |
| Conread position: | 1109-1525 |
| Cow position: | chr23:25724129-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 265 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 1109-1548 |
| Cow position: | chr23:25626028-25626467 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 246, 241 |
| Conread position: | 1110-1548 |
| Cow position: | chr23:24560889-24560453 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1122-1548 |
| Cow position: | chr23:24536034-24535608 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 262 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 160, 168 |
| Conread position: | 1139-1539 |
| Cow position: | chr23:25698627-25698228 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 279, 19 |
| Conread position: | 1189-1544 |
| Cow position: | chr23:24626302-24626657 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 1269-1542 |
| Cow position: | chr23:25724053-25723780 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 1277-1544 |
| Cow position: | chr23:24626306-24626573 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1290-1548 |
| Cow position: | chr23:25724116-25723858 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 57 |
Show alignments to all cow chromosomes.