Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 847-1541 |
| Cow position: | chr6:49428551-49429245 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 856-1548 |
| Cow position: | chr6:49340484-49341176 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 857-1544 |
| Cow position: | chr6:49340401-49341088 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 859-1200 |
| Cow position: | chr6:49429151-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 860-1387 |
| Cow position: | chr6:49340908-49341435 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 872-1486 |
| Cow position: | chr6:49396305-49396919 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 366 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 264, 258 |
| Conread position: | 872-1542 |
| Cow position: | chr6:49428744-49429414 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 872-1548 |
| Cow position: | chr6:49428492-49429168 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 873-1548 |
| Cow position: | chr6:49340669-49341344 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 874-1542 |
| Cow position: | chr6:49428242-49428910 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 874-1542 |
| Cow position: | chr6:49428326-49428994 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 217 |
| Conread position: | 875-1544 |
| Cow position: | chr6:49340587-49341256 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 133 |
| Conread position: | 875-1544 |
| Cow position: | chr6:49340755-49341424 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 132 |
| Conread position: | 875-1547 |
| Cow position: | chr6:49428831-49429503 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 877-1542 |
| Cow position: | chr6:49396226-49396891 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 208 |
| Conread position: | 884-1296 |
| Cow position: | chr6:49396569-49396983 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 195, 207 |
| Conread position: | 923-1487 |
| Cow position: | chr6:49362246-49362786 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 494, 81 |
| Conread position: | 923-1542 |
| Cow position: | chr6:49340385-49341002 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 935-1539 |
| Cow position: | chr6:49428471-49429075 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 156 |
| Conread position: | 954-1542 |
| Cow position: | chr6:49395889-49396471 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 348 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 298, 287 |
| Conread position: | 987-1544 |
| Cow position: | chr6:49340363-49340920 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 22 |
| Conread position: | 1045-1543 |
| Cow position: | chr6:49396226-49396724 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 309, 305 |
| Conread position: | 1108-1544 |
| Cow position: | chr6:49340400-49340836 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 1114-1542 |
| Cow position: | chr6:49428230-49428658 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 129 |
| Conread position: | 1191-1542 |
| Cow position: | chr6:49428222-49428574 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 147 |
Show alignments to all cow chromosomes.