Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010001G06.5 |
| Conread position: | 244-375 |
| Cow position: | chr7:42881429-42881298 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 834-1543 |
| Cow position: | chr7:3179755-3180464 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 71 |
| Conread position: | 849-1544 |
| Cow position: | chr7:11601280-11600587 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 856-1503 |
| Cow position: | chr7:18390158-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 409 |
| Conread position: | 858-1543 |
| Cow position: | chr7:42879278-42878593 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 558, 549 |
| Conread position: | 859-1224 |
| Cow position: | chr7:11600852-11600487 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 859-1338 |
| Cow position: | chr7:18390327-18390808 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 859-1497 |
| Cow position: | chr7:1014852-1015494 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 386 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 859-1548 |
| Cow position: | chr7:42879194-42878504 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 555 |
| Conread position: | 860-1335 |
| Cow position: | chr7:3180369-3180843 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 148 |
| Conread position: | 860-1543 |
| Cow position: | chr7:3180033-3180716 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 55 |
| Conread position: | 868-1402 |
| Cow position: | chr7:42878848-42878314 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 868-1542 |
| Cow position: | chr7:8277604-8278278 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 402 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 227, 218 |
| Conread position: | 869-1536 |
| Cow position: | chr7:3180210-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 400 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 869-1541 |
| Cow position: | chr7:1014780-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 408 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 115, 105 |
| Conread position: | 881-1548 |
| Cow position: | chr7:42879003-42878336 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 881-1548 |
| Cow position: | chr7:42879087-42878420 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 882-1548 |
| Cow position: | chr7:18390016-18390682 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 888-1544 |
| Cow position: | chr7:42879333-42878676 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 463 |
| Conread position: | 890-1544 |
| Cow position: | chr7:11601157-11600503 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 382 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 269, 262 |
| Conread position: | 923-1402 |
| Cow position: | chr7:8325636-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 150, 159 |
| Conread position: | 923-1452 |
| Cow position: | chr7:8277911-8278440 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 328 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 925-1542 |
| Cow position: | chr7:42879379-42878762 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 927-1543 |
| Cow position: | chr7:18390144-18390761 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 930-1526 |
| Cow position: | chr7:28846493-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 135 |
| Conread position: | 932-1525 |
| Cow position: | chr7:12293420-12294013 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 358 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 498, 505 |
| Conread position: | 932-1544 |
| Cow position: | chr7:1014759-1015371 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 369 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 147, 160 |
| Conread position: | 934-1524 |
| Cow position: | chr7:42878866-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 525, 529 |
| Conread position: | 934-1536 |
| Cow position: | chr7:8277838-8278440 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 361 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 17 |
| Conread position: | 941-1498 |
| Cow position: | chr7:12293345-12293902 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 339 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 235, 221 |
| Conread position: | 967-1487 |
| Cow position: | chr7:28846446-28846966 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 28, 41 |
| Conread position: | 968-1544 |
| Cow position: | chr7:3179721-3180297 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 354 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 197, 185 |
| Conread position: | 998-1542 |
| Cow position: | chr7:12293318-12293862 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 244 |
| Conread position: | 1023-1548 |
| Cow position: | chr7:11601193-11600667 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 320 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 6, 300 |
| Conread position: | 1029-1543 |
| Cow position: | chr7:1014688-1015202 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 315 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 179, 170 |
| Conread position: | 1032-1542 |
| Cow position: | chr7:12293268-12293778 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 398, 404 |
| Conread position: | 1037-1539 |
| Cow position: | chr7:3179706-3180208 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 139, 125 |
| Conread position: | 1038-1540 |
| Cow position: | chr7:28846433-28846935 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 302 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 236, 240 |
| Conread position: | 1136-1548 |
| Cow position: | chr7:42879252-42878840 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 220, 214 |
| Conread position: | 1184-1542 |
| Cow position: | chr7:28846493-28846853 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 134 |
Show alignments to all cow chromosomes.