Cow genome map
| Conread name: | Ss1.1-Liv1-LVR010022A11.5.5 |
| Conread position: | 1-149 |
| Cow position: | chr7:6676536-6676685 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 148-350 |
| Cow position: | chr7:6598088-6597886 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-350 |
| Cow position: | chr7:6615566-6615768 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-350 |
| Cow position: | chr7:6676965-6677167 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-350 |
| Cow position: | chr7:6741946-6741744 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-493 |
| Cow position: | chr7:6679063-6679208 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-498 |
| Cow position: | chr7:6617589-6617739 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 352-504 |
| Cow position: | chr7:6595990-6595838 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 543-673 |
| Cow position: | chr7:6698299-6698429 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 543-674 |
| Cow position: | chr7:6682130-6682261 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 119 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 543-674 |
| Cow position: | chr7:6732836-6732705 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 543-676 |
| Cow position: | chr7:6592572-6592439 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 121 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 543-676 |
| Cow position: | chr7:6620616-6620749 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 123 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 547-676 |
| Cow position: | chr7:6767716-6767587 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 673-798 |
| Cow position: | chr7:6590829-6590704 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 118 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 673-798 |
| Cow position: | chr7:6623151-6623276 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 116 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 673-798 |
| Cow position: | chr7:6685135-6685260 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 673-798 |
| Cow position: | chr7:6728381-6728256 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 677-798 |
| Cow position: | chr7:6700795-6700916 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 798-1069 |
| Cow position: | chr7:6623686-6623957 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 798-1069 |
| Cow position: | chr7:6686113-6686384 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 798-1069 |
| Cow position: | chr7:6701693-6701962 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 798-1069 |
| Cow position: | chr7:6727287-6727016 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 798-1081 |
| Cow position: | chr7:6762804-6762526 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 83, 53 |
| Conread position: | 1067-1136 |
| Cow position: | chr7:6687848-6687917 (view UCSC Genome Browser custom track) |
| Alignm length: | 70 |
| Alignm identity: | 69 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1067-1136 |
| Cow position: | chr7:6726429-6726360 (view UCSC Genome Browser custom track) |
| Alignm length: | 70 |
| Alignm identity: | 69 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1135-1266 |
| Cow position: | chr7:6653566-6653697 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 127 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1135-1266 |
| Cow position: | chr7:6703745-6703876 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1135-1266 |
| Cow position: | chr7:6726167-6726036 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 128 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1135-1273 |
| Cow position: | chr7:6688081-6688219 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1265-1402 |
| Cow position: | chr7:6656383-6656520 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 124 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1265-1402 |
| Cow position: | chr7:6691331-6691468 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 123 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1265-1402 |
| Cow position: | chr7:6707300-6707435 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1265-1402 |
| Cow position: | chr7:6712657-6712520 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1265-1402 |
| Cow position: | chr7:6758347-6758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1463-1562 |
| Cow position: | chr7:6656862-6656962 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1544-1707 |
| Cow position: | chr7:6755205-6755039 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 100 |
| Conread position: | 1545-1745 |
| Cow position: | chr7:6708224-6708421 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1545-1798 |
| Cow position: | chr7:6657325-6657577 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 205 |
| Conread position: | 1545-1806 |
| Cow position: | chr7:6711975-6711716 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 208 |
| Conread position: | 1545-1809 |
| Cow position: | chr7:6692253-6692512 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 204 |
Show alignments to all cow chromosomes.